View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_high_19 (Length: 354)
Name: NF11700_high_19
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 35023552 - 35023215
Alignment:
| Q |
1 |
tattttaccaggcaaaggaatgtaatacagacaaagaggttcagaataaaaagtatcataagcagtcatgtactcatgtggatcctatatgtgacatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35023552 |
tattttaccaggcaaaggaatgtaatacagacaaagagattcagaataaaaagtatcataagcagtcatgttctcatgtggatcctatatgtgacatgtt |
35023453 |
T |
|
| Q |
101 |
tgagcctcaaaggagagcatagatgctggatactagtttcatcctatagagtttttggttcaactataaattttgctgtatattaacaaagaatttgtat |
200 |
Q |
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| T |
35023452 |
tgagcctcaaaggagagcatagatgctggatactagtttcatcctatagagtttttggttcaactataaattttgctgtatattaacaaagaatttgtat |
35023353 |
T |
|
| Q |
201 |
ctatatttgggtgagtgtttgctcaccaccacggcacaatggcacgcgatttcctcaagccacaaagtctagcttccacaccgacgtggttttctgcctt |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35023352 |
ctatatttgggtgagtgtttgctcaccattacggcacaatggcacgcgatttcctcaagccacaaagtctagcttccacaccgacgtggttttctgcctt |
35023253 |
T |
|
| Q |
301 |
agttccaagggttttgaacgcggaaccaaacacatact |
338 |
Q |
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| T |
35023252 |
agttccaagggttttgaacgcggaaccaaacacatact |
35023215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 35027217 - 35027144
Alignment:
| Q |
84 |
cctatatgtgacatgtttgagcctcaaaggagagcatagatgctggatactagtttcatcctatagagtttttg |
157 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| | ||||||||||||||| |
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| T |
35027217 |
cctatatgtgacatgtttgagcctcaaaggagtgcataggtgctggatattagttttaccctatagagtttttg |
35027144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 35027334 - 35027276
Alignment:
| Q |
13 |
caaaggaatgtaatacagacaaagaggttcagaataaaaagtatcataagcagtcatgt |
71 |
Q |
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||||||||||| ||||||||||| | ||||| || ||||||||||||||||||||||| |
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| T |
35027334 |
caaaggaatgtgatacagacaaaaggcttcaggatcaaaagtatcataagcagtcatgt |
35027276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 338
Target Start/End: Complemental strand, 35027032 - 35026951
Alignment:
| Q |
257 |
aagccacaaagtctagcttccacaccgacgtggttttctgccttagttccaagggttttgaacgcggaaccaaacacatact |
338 |
Q |
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|||| ||||||| |||||||||| | | | ||| ||||||| ||||| |||||||||| ||||||||||||||||||||| |
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| T |
35027032 |
aagctacaaagtgtagcttccacgtcaatgaggtgttctgccgcagttctaagggttttggacgcggaaccaaacacatact |
35026951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 36862503 - 36862602
Alignment:
| Q |
87 |
atatgtgacatgtttgagcctcaaaggagagcatagatgctggatacta-gtttcatcctatagagtttttggttcaactataaattttgctgtatatta |
185 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||| | || | ||||| |||||||||| |
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| T |
36862503 |
atatgtgacatgtttgagcctcaaaggagagcataggtgctgaatactaggttttatcctatagagtttttggttcga-taaatatttttctgtatatta |
36862601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 36862397 - 36862455
Alignment:
| Q |
13 |
caaaggaatgtaatacagacaaagaggttcagaataaaaagtatcataagcagtcatgt |
71 |
Q |
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||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||| |
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| T |
36862397 |
caaaggaatgtgatacagacaaagggattcaggataaaaagtatcataagcagtcatgt |
36862455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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