View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_high_21 (Length: 327)
Name: NF11700_high_21
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 40453425 - 40453726
Alignment:
| Q |
11 |
cacagatccaaaaagaactccagcaagagatctcactgtcactgctcctagttcaccttctcctttacccatcaaccctaaacatgtccatgaaaaggcc |
110 |
Q |
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| T |
40453425 |
cacagatccaaaaagaactccagcaagagatctcactgtcactgctcctagttcaccttctcctttacccatcaaccctaaacatgtccatgaaaaggcc |
40453524 |
T |
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| Q |
111 |
aagaaaaacactacttcaaagcttagcgataagaaaaagaaaaatgcaacaaagagtactcatgatcagaagaagaaaagtactactacaacagaaaaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453525 |
aagaaaaacactacttcaaagcttagcgataagaaaaagaaaaatgcaacaaagagtactcatgatcagaagaagaaaagtactactacaacagaaaaag |
40453624 |
T |
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| Q |
211 |
tgactgaacatattgcaaacaattactcttcaaaaccggttgatagtattttaagaaggagttgggttaagccagcttctgatttaatcactcctcctac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453625 |
tgactgaacatattgcaaacaattactcttcaaaaccggttgatagtattttaagaaggagttgggttaagccagcttctgatttaatcactcctcctac |
40453724 |
T |
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| Q |
311 |
tt |
312 |
Q |
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|| |
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| T |
40453725 |
tt |
40453726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 245
Target Start/End: Complemental strand, 20008263 - 20008124
Alignment:
| Q |
103 |
aaaaggccaagaaaaacactacttcaaagcttagcgataagaaaaagaaaaatgcaacaaagagtactcatgatcagaagaagaaaagtactactacaac |
202 |
Q |
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| T |
20008263 |
aaaaggccaagaaaatcactatttcattgctaaataataagaaaaataaaaaagcaaccaaggctacccgtgtccataaaaagaaaag---tactacatc |
20008167 |
T |
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| Q |
203 |
agaaaaagtgactgaacatattgcaaacaattactcttcaaaa |
245 |
Q |
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||||||| | ||| |||| |||||||||||||||||||||||| |
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| T |
20008166 |
agaaaaacttactaaacaaattgcaaacaattactcttcaaaa |
20008124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 24973555 - 24973587
Alignment:
| Q |
213 |
actgaacatattgcaaacaattactcttcaaaa |
245 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
24973555 |
actgaacaaattgcaaacaattactcttcaaaa |
24973587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 31252246 - 31252282
Alignment:
| Q |
11 |
cacagatccaaaaagaactccagcaagagatctcact |
47 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
31252246 |
cacagatccaaaaagaactccctcaagagatctcact |
31252282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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