View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_high_25 (Length: 253)
Name: NF11700_high_25
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 20688591 - 20688738
Alignment:
| Q |
93 |
ttaaagattattaaatattacacaaggtaattagccaaattttatcaagcataaacctatgtataccattgggggaggcaaaacacgggcatcaaccaaa |
192 |
Q |
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| T |
20688591 |
ttaaagattattaaatattacacaaggcaattagccaaattttattaagcataaacctatgtataccgttgggggaggcaaaacacgggcatcaaccaaa |
20688690 |
T |
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| Q |
193 |
gcaagttcctcccttacattgataccaaactcacacacaacttcgtct |
240 |
Q |
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| T |
20688691 |
gcaagttcctcccttacattgataccaaactcacacacaacttcgtct |
20688738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 20664174 - 20664315
Alignment:
| Q |
86 |
aagaaaattaaagattattaaatattaca---caaggtaattagccaaattttatcaagcataaacctatgtataccattgggggaggcaaaacacgggc |
182 |
Q |
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| T |
20664174 |
aagaaaattaaatattattaaatatcacaaaacaagataaatagctaaattttattaagcataaacctaggtataccatcgggggaggcaaaacacgggc |
20664273 |
T |
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| Q |
183 |
atcaaccaaagcaagttcctcccttacattgataccaaactc |
224 |
Q |
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| T |
20664274 |
gtcaaccaatgcaagttcctcccttacattgataccaaactc |
20664315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 20688369 - 20688453
Alignment:
| Q |
18 |
tcatcatattccattgtcccatcatggggttaatttttgactctgcaccatatttgagctgcagtcagaagaaaattaaagatta |
102 |
Q |
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| T |
20688369 |
tcatcatattccattgtcccatcatggggttaatttttgactctccaccatatttgagctgcagtcagaagaaaattaaagatta |
20688453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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