View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11700_high_31 (Length: 246)

Name: NF11700_high_31
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11700_high_31
NF11700_high_31
[»] chr1 (21 HSPs)
chr1 (1-227)||(2073829-2074060)
chr1 (1-227)||(2069483-2069714)
chr1 (168-225)||(8177201-8177259)
chr1 (168-225)||(51814493-51814551)
chr1 (169-225)||(19528346-19528403)
chr1 (176-227)||(17745273-17745325)
chr1 (168-227)||(25297771-25297831)
chr1 (168-227)||(40257398-40257458)
chr1 (168-225)||(8904413-8904471)
chr1 (169-207)||(11068881-11068919)
chr1 (169-222)||(19480527-19480581)
chr1 (168-225)||(41508830-41508888)
chr1 (170-223)||(44126396-44126450)
chr1 (169-225)||(9165214-9165271)
chr1 (169-210)||(16170013-16170054)
chr1 (169-202)||(38978985-38979018)
chr1 (169-210)||(42983409-42983450)
chr1 (169-225)||(47753714-47753771)
chr1 (169-225)||(51703779-51703836)
chr1 (169-225)||(52116800-52116857)
chr1 (169-224)||(9117119-9117175)
[»] chr6 (12 HSPs)
chr6 (169-227)||(24641207-24641266)
chr6 (176-229)||(6776622-6776676)
chr6 (168-227)||(33549103-33549163)
chr6 (167-225)||(12188322-12188381)
chr6 (171-210)||(32613175-32613214)
chr6 (168-210)||(12234542-12234584)
chr6 (169-225)||(21418470-21418527)
chr6 (176-205)||(34444810-34444839)
chr6 (169-205)||(28028530-28028566)
chr6 (168-227)||(31623008-31623068)
chr6 (169-224)||(32201905-32201961)
chr6 (176-208)||(33931982-33932014)
[»] chr5 (11 HSPs)
chr5 (169-227)||(14495822-14495881)
chr5 (167-225)||(29692405-29692464)
chr5 (176-227)||(1410676-1410728)
chr5 (169-227)||(16773807-16773866)
chr5 (176-227)||(19949633-19949684)
chr5 (169-227)||(29075781-29075840)
chr5 (176-225)||(16436625-16436674)
chr5 (169-225)||(16457810-16457867)
chr5 (169-210)||(21589288-21589329)
chr5 (169-205)||(892514-892550)
chr5 (169-224)||(21549157-21549213)
[»] chr7 (17 HSPs)
chr7 (167-210)||(35119381-35119424)
chr7 (168-227)||(45709725-45709785)
chr7 (169-225)||(15137553-15137610)
chr7 (169-225)||(22760863-22760920)
chr7 (169-205)||(23301642-23301678)
chr7 (169-224)||(48771938-48771994)
chr7 (169-208)||(4161288-4161327)
chr7 (169-222)||(7801180-7801234)
chr7 (168-225)||(23552117-23552175)
chr7 (176-225)||(23595736-23595786)
chr7 (169-222)||(25956314-25956368)
chr7 (168-225)||(26526289-26526347)
chr7 (176-225)||(41519283-41519333)
chr7 (169-225)||(25021354-25021411)
chr7 (169-225)||(26459429-26459486)
chr7 (168-205)||(41487361-41487398)
chr7 (169-225)||(43590907-43590964)
[»] chr3 (20 HSPs)
chr3 (173-227)||(4844528-4844583)
chr3 (173-227)||(4870224-4870279)
chr3 (168-224)||(5499427-5499484)
chr3 (169-210)||(16991542-16991583)
chr3 (169-225)||(14186648-14186704)
chr3 (168-227)||(31520622-31520682)
chr3 (173-227)||(2667866-2667921)
chr3 (168-210)||(10499144-10499186)
chr3 (168-227)||(8051213-8051273)
chr3 (168-227)||(36720380-36720440)
chr3 (169-227)||(31788987-31789046)
chr3 (169-207)||(203090-203128)
chr3 (168-225)||(7975417-7975475)
chr3 (176-225)||(13808904-13808954)
chr3 (169-222)||(42430335-42430388)
chr3 (168-225)||(46518627-46518685)
chr3 (169-225)||(4222141-4222198)
chr3 (169-225)||(14339610-14339667)
chr3 (177-224)||(11612307-11612355)
chr3 (173-205)||(17554454-17554486)
[»] chr8 (9 HSPs)
chr8 (169-225)||(32157191-32157248)
chr8 (169-225)||(23361668-23361725)
chr8 (168-227)||(16852339-16852399)
chr8 (169-227)||(968362-968421)
chr8 (169-223)||(20994479-20994534)
chr8 (168-225)||(19703506-19703564)
chr8 (169-225)||(26688865-26688922)
chr8 (168-227)||(4830486-4830546)
chr8 (165-205)||(22268973-22269013)
[»] chr2 (12 HSPs)
chr2 (168-227)||(39714991-39715051)
chr2 (167-225)||(37480073-37480132)
chr2 (168-225)||(34041607-34041665)
chr2 (166-229)||(29197391-29197455)
chr2 (176-224)||(3001386-3001435)
chr2 (169-225)||(4438998-4439055)
chr2 (168-197)||(25931005-25931034)
chr2 (169-225)||(42327414-42327471)
chr2 (168-227)||(7799052-7799112)
chr2 (170-225)||(16918597-16918653)
chr2 (169-224)||(18259730-18259786)
chr2 (169-205)||(32106566-32106602)
[»] chr4 (13 HSPs)
chr4 (169-227)||(9241042-9241101)
chr4 (169-227)||(47044717-47044776)
chr4 (168-210)||(51250557-51250599)
chr4 (169-224)||(28635696-28635752)
chr4 (169-227)||(19238594-19238653)
chr4 (167-210)||(27965545-27965588)
chr4 (169-227)||(51948480-51948539)
chr4 (169-227)||(19229225-19229283)
chr4 (169-225)||(37109370-37109427)
chr4 (169-210)||(55427235-55427276)
chr4 (169-205)||(13496241-13496277)
chr4 (176-227)||(21660161-21660213)
chr4 (176-227)||(21668925-21668977)
[»] scaffold0187 (2 HSPs)
scaffold0187 (169-202)||(12465-12498)
scaffold0187 (169-202)||(22793-22826)
[»] scaffold0299 (1 HSPs)
scaffold0299 (176-227)||(11535-11587)
[»] scaffold0258 (1 HSPs)
scaffold0258 (169-227)||(15340-15399)
[»] scaffold0070 (1 HSPs)
scaffold0070 (169-210)||(42555-42596)
[»] scaffold1367 (1 HSPs)
scaffold1367 (176-227)||(857-909)
[»] scaffold0417 (1 HSPs)
scaffold0417 (166-210)||(10216-10260)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2073829 - 2074060
Alignment:
Q  1 attggaaggagattcatgtgcgggatccaaaataaatggagcatcaacttgatggtttgattcgacgacatcattacgaatt-----atctgtcacattg 95  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     |||||||||||||    
T  2073829 attggaaggagattcatgtacgggatccaaaataaatggagcatcaacttgatggtttgattcgacgacataattacgaattcttttatctgtcacattg 2073928  T
Q  96 tgcaaaaccatatagaaagaagtgtcaaccttatctgtaactgcaaatgtgtctttaacactttcaaccaccaaacccatttgggttggcctggtggtat 195  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2073929 tgcaaaaccatacagaaagaagtgtcaaccttatctgtaactgcaaatgtgtctttaacactttcaaccaccaaacccatttgggttggcctggttgtat 2074028  T
Q  196 tgacttgggatctggcgtgtgctcctcctcga 227  Q
    ||||||||||||| ||||||||||||||||||    
T  2074029 tgacttgggatctagcgtgtgctcctcctcga 2074060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2069483 - 2069714
Alignment:
Q  1 attggaaggagattcatgtgcgggatccaaaataaatggagcatcaacttgatggtttgattcgacgacatcattacgaatt-----atctgtcacattg 95  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     |||||||||||||    
T  2069483 attggaaggagattcatgtacgggatccaaaataaatggagcatcaacttgatggtttgattcgacgacataattacgaattcttttatctgtcacattg 2069582  T
Q  96 tgcaaaaccatatagaaagaagtgtcaaccttatctgtaactgcaaatgtgtctttaacactttcaaccaccaaacccatttgggttggcctggtggtat 195  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  2069583 tgcaaaaccatacagaaagaagtgtcaaccttatctgtaattgcaaatgtgtctttaacactttcaaccaccacacccatttgggttggcctggttgtat 2069682  T
Q  196 tgacttgggatctggcgtgtgctcctcctcga 227  Q
    |||||||||||||||| |||||||||||||||    
T  2069683 tgacttgggatctggcatgtgctcctcctcga 2069714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 8177259 - 8177201
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    ||||||||||| |||||||| ||||||||| |||||||||| || ||||||||||||||    
T  8177259 aaacccatttgagttggcctagtggtattggcttgggatctgggagtgtgctcctcctc 8177201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 51814493 - 51814551
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctc 225  Q
    ||||||| ||||||||||||| ||||||||||||| |||||| | ||||||||||||||    
T  51814493 aaacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctc 51814551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 19528403 - 19528346
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||| |||||||||||||||||||||| ||||||||||  | ||||||||||||||    
T  19528403 aacccacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctc 19528346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 17745325 - 17745273
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcga 227  Q
    |||||||||||| ||||||||| ||||||| ||| ||||||||||||||||||    
T  17745325 ttgggttggcctagtggtattggcttgggacctgagcgtgtgctcctcctcga 17745273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 25297771 - 25297831
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcga 227  Q
    ||||||| ||||||||| || ||||||||||||| ||||||| | ||||||||||||||||    
T  25297771 aaacccacttgggttggtctagtggtattgacttaggatctgagagtgtgctcctcctcga 25297831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 40257398 - 40257458
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||||| |||||||||||||||||||||| |||| || || || ||||||||||||||||    
T  40257398 aaacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcga 40257458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 8904413 - 8904471
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctc 225  Q
    ||||||| |||||||||||| || ||||||||||||||| || | ||||||||||||||    
T  8904413 aaacccacttgggttggcctagtagtattgacttgggatatgtgagtgtgctcctcctc 8904471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 11068919 - 11068881
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatc 207  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  11068919 aacccatttgggttgatctggtggtattgacttgggatc 11068881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 19480527 - 19480581
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctc 222  Q
    |||||||||||||||||||  |||| ||||||||||||| ||| |||||||||||    
T  19480527 aacccatttgggttggccttatggtgttgacttgggatcttggagtgtgctcctc 19480581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 41508830 - 41508888
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    ||||||| ||||||||||||||||||| ||  ||||||||| || ||||||||||||||    
T  41508830 aaacccacttgggttggcctggtggtactggtttgggatctgggagtgtgctcctcctc 41508888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 44126396 - 44126450
Alignment:
Q  170 acccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcc 223  Q
    ||||| |||||||||||||||||||||||| ||||| || || ||||||||||||    
T  44126396 acccacttgggttggcctggtggtattgacctgggacctgggagtgtgctcctcc 44126450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 9165271 - 9165214
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||| |||||||||||| ||||||||| ||||||| || || ||||||||||||||    
T  9165271 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 9165214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 16170054 - 16170013
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    |||||| ||||||| |||||||||||||||||||||| ||||    
T  16170054 aacccacttgggttagcctggtggtattgacttgggacctgg 16170013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 38979018 - 38978985
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttg 202  Q
    ||||||||||||||||||| ||||||||||||||    
T  38979018 aacccatttgggttggcctagtggtattgacttg 38978985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 42983450 - 42983409
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  42983450 aacctatttgggttggcatggtggtattgacttgagatctgg 42983409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 47753714 - 47753771
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    ||||||||| ||||| |||||| ||||||||||||||||| ||  |||||||||||||    
T  47753714 aacccatttaggttgacctggtcgtattgacttgggatctaggactgtgctcctcctc 47753771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 51703779 - 51703836
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||||||||||||| || ||||||||| ||||| |||| || ||||||||||||||    
T  51703779 aacccatttgggttggtctagtggtattggcttggaatctgggagtgtgctcctcctc 51703836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 52116857 - 52116800
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctc 225  Q
    |||||| |||||||||||||||||||||| ||||||| |  || ||||||||||||||    
T  52116857 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctc 52116800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 9117119 - 9117175
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctgg-cgtgtgctcctcct 224  Q
    |||||||||||||||||| | |||||| | ||||||||||||  |||||||||||||    
T  9117119 aacccatttgggttggccggttggtatgggcttgggatctggaagtgtgctcctcct 9117175  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 24641266 - 24641207
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||    
T  24641266 aacccatttgggttggcttggtggtattgacttgggatctgggagtgtgctcctcctcga 24641207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 6776676 - 6776622
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcgatg 229  Q
    |||||||||||||||||||||| |||||||||| || ||||||||||||||||||    
T  6776676 ttgggttggcctggtggtattggcttgggatctgggggtgtgctcctcctcgatg 6776622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 33549103 - 33549163
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||||| ||||||||| |||||||||||| ||||||| || || ||||||||||||||||    
T  33549103 aaacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcga 33549163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 12188381 - 12188322
Alignment:
Q  167 caaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||||| |||||||||||| ||||||||| ||||||| || || ||||||||||||||    
T  12188381 caaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 12188322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 32613214 - 32613175
Alignment:
Q  171 cccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  32613214 cccacttgggttggcctggtggtattgacttggggtctgg 32613175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 12234584 - 12234542
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    ||||||| || ||||||||||||||||||||||||||| ||||    
T  12234584 aaacccacttaggttggcctggtggtattgacttgggacctgg 12234542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 21418470 - 21418527
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctc 225  Q
    |||||| |||||||||||||||||||||| ||||||| |  || ||||||||||||||    
T  21418470 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctc 21418527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 34444810 - 34444839
Alignment:
Q  176 ttgggttggcctggtggtattgacttggga 205  Q
    ||||||||||||||||||||||||||||||    
T  34444810 ttgggttggcctggtggtattgacttggga 34444839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 28028530 - 28028566
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttggga 205  Q
    |||||| |||||||||||||||||| |||||||||||    
T  28028530 aacccacttgggttggcctggtggtgttgacttggga 28028566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 31623068 - 31623008
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctggc-gtgtgctcctcctcga 227  Q
    ||||||| ||||||||| | |||||||||| ||||||| ||||  ||||||||||||||||    
T  31623068 aaacccacttgggttggtccggtggtattggcttgggacctgggagtgtgctcctcctcga 31623008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 32201961 - 32201905
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcct 224  Q
    ||||||||||||||| | ||||||||||| ||||||||||  | |||||||||||||    
T  32201961 aacccatttgggttgacttggtggtattggcttgggatctcagagtgtgctcctcct 32201905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 33932014 - 33931982
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatct 208  Q
    |||||||| ||||||||||||||||||||||||    
T  33932014 ttgggttgacctggtggtattgacttgggatct 33931982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 14495881 - 14495822
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    |||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  14495881 aacccatttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcga 14495822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 29692464 - 29692405
Alignment:
Q  167 caaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||||||||||||||| ||||||||||||  ||||||||| || ||||||||||||||    
T  29692464 caaacccatttgggttggtctggtggtattggattgggatctgggagtgtgctcctcctc 29692405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 1410728 - 1410676
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||||||| ||||||||||||||||||||| | || ||||||||||||||||    
T  1410728 ttgggttggtctggtggtattgacttgggatatgggagtgtgctcctcctcga 1410676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 16773807 - 16773866
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    |||||| ||| ||||| |||||||||||||||||||| || || ||||||||||||||||    
T  16773807 aacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcga 16773866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 19949684 - 19949633
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatctggcgtgtgctcctcctcga 227  Q
    |||||||| | |||||||||||||||| ||||| | ||||||||||||||||    
T  19949684 ttgggttgacttggtggtattgacttgagatctagagtgtgctcctcctcga 19949633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 29075781 - 29075840
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    |||||| ||||||| |||| ||||||||| |||||||||| || ||||||||||||||||    
T  29075781 aacccacttgggtttgcctagtggtattggcttgggatctgggagtgtgctcctcctcga 29075840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 16436625 - 16436674
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatctggcgtgtgctcctcctc 225  Q
    |||||||||||| ||||||||| |||||||  ||| ||||||||||||||    
T  16436625 ttgggttggcctagtggtattggcttgggacttggagtgtgctcctcctc 16436674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 16457810 - 16457867
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctcctc 225  Q
    |||||| || ||||||||||||||||||| ||||||| | ||| ||||||||||||||    
T  16457810 aacccacttaggttggcctggtggtattggcttgggaccttggagtgtgctcctcctc 16457867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 21589288 - 21589329
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    |||||| |||||||||||||||||||||| ||||||| ||||    
T  21589288 aacccacttgggttggcctggtggtattggcttgggacctgg 21589329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 892550 - 892514
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttggga 205  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  892550 aacccatttgggttggcctagtggtattggcttggga 892514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 21549213 - 21549157
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcct 224  Q
    |||||| |||||||||||| ||||||||| ||||||| || || |||||||||||||    
T  21549213 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcct 21549157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 35119381 - 35119424
Alignment:
Q  167 caaacccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  35119381 caaacccatttgggttggcctagtggtattgacttgggatctgg 35119424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 45709785 - 45709725
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcga 227  Q
    |||||||||||||||||||| ||||||||  ||||||||||| | ||||||||||||||||    
T  45709785 aaacccatttgggttggcctagtggtattagcttgggatctgagagtgtgctcctcctcga 45709725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 15137553 - 15137610
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||| ||||||||||||||||||| ||||||||||| | || ||||||||||||||    
T  15137553 aacccacttgggttggcctggtggtactgacttgggatttaggagtgtgctcctcctc 15137610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 22760863 - 22760920
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||| ||||||||| |||||||||||||||||||| || || ||||||||||||||    
T  22760863 aacccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctc 22760920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 23301678 - 23301642
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttggga 205  Q
    |||||| ||||||||||||||||||||||||||||||    
T  23301678 aacccacttgggttggcctggtggtattgacttggga 23301642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 48771938 - 48771994
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcct 224  Q
    |||||| |||||||||| ||||||||||| |||||||||| || |||||||||||||    
T  48771938 aacccacttgggttggcttggtggtattggcttgggatctgggagtgtgctcctcct 48771994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 4161288 - 4161327
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct 208  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  4161288 aacccatttgggttggtctggtggtattggcttgggatct 4161327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 7801180 - 7801234
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctc 222  Q
    |||||| |||| ||||||||||||||||||||||||| || || |||||||||||    
T  7801180 aacccacttggtttggcctggtggtattgacttgggacctgggagtgtgctcctc 7801234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 23552117 - 23552175
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    ||||||| |||||||||||| ||| ||||||||||||| || || ||||||||||||||    
T  23552117 aaacccacttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctc 23552175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 23595736 - 23595786
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    ||||||||| ||||||||||||||||| ||||| || ||||||||||||||    
T  23595736 ttgggttggtctggtggtattgacttgagatctcggagtgtgctcctcctc 23595786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 25956368 - 25956314
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctc 222  Q
    ||||||||||||||||||| ||||||||| ||||||| | ||| |||||||||||    
T  25956368 aacccatttgggttggcctagtggtattggcttgggaccttggagtgtgctcctc 25956314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 26526289 - 26526347
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctc 225  Q
    |||||||||||| |||| |||||||||||||||| |||| || | ||||||||||||||    
T  26526289 aaacccatttggattggtctggtggtattgacttaggatttgagagtgtgctcctcctc 26526347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 41519333 - 41519283
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||||||||| |||||||||||||||||| | || ||||||||||||||    
T  41519333 ttgggttggcctagtggtattgacttgggatttaggagtgtgctcctcctc 41519283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 25021411 - 25021354
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||| |||||||||||| ||||||||| ||||||| || || ||||||||||||||    
T  25021411 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 25021354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 26459486 - 26459429
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||| |||||||||||| ||||||||| ||||||| || || ||||||||||||||    
T  26459486 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 26459429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 41487361 - 41487398
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttggga 205  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  41487361 aaacccacttgggttggcctggtggtattggcttggga 41487398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 43590907 - 43590964
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctc 225  Q
    |||||| |||||||||||||||||||||| ||||||| |  || ||||||||||||||    
T  43590907 aacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctc 43590964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 4844583 - 4844528
Alignment:
Q  173 catttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  4844583 catttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcga 4844528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 4870279 - 4870224
Alignment:
Q  173 catttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  4870279 catttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcga 4870224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 5499484 - 5499427
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcct 224  Q
    ||||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||    
T  5499484 aaacccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctcct 5499427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 16991542 - 16991583
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  16991542 aacccatttgggttggcctggtggtattggcttgggatctgg 16991583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 14186648 - 14186704
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctggcgtgtgctcctcctc 225  Q
    |||||| |||||||||||| ||||||||| ||||||| |||| ||||||||||||||    
T  14186648 aacccacttgggttggcctagtggtattgtcttgggacctggagtgtgctcctcctc 14186704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 31520682 - 31520622
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||||| ||||||||||||||||| |||| |||||||||| || ||||||||||||||||    
T  31520682 aaacccacttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctcga 31520622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 2667866 - 2667921
Alignment:
Q  173 catttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||| |||||||    
T  2667866 catttgggttggcctggtggtattggcttgggatctgggagtgtgctcttcctcga 2667921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 10499186 - 10499144
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  10499186 aaacccacttgggttggcctggtggtattggcttgggatctgg 10499144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 8051213 - 8051273
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctggc-gtgtgctcctcctcga 227  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||| || |||| ||||||||    
T  8051213 aaacccacttgggttggcctggtggtattggcttgggacctggcagtatgcttctcctcga 8051273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 36720380 - 36720440
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||||| ||||||||| |||||||||||| |||||||| | || ||||||||||||||||    
T  36720380 aaacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcga 36720440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 31789046 - 31788987
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    |||||| |||||||||||| ||| ||||| |||||||||| || ||||||||||||||||    
T  31789046 aacccacttgggttggcctagtgttattggcttgggatctgggagtgtgctcctcctcga 31788987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 203090 - 203128
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatc 207  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  203090 aacccacttgggttggcctagtggtattgacttgggatc 203128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 7975417 - 7975475
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||||||| ||||||||| ||||||| | |||||||||| || ||||||||||||||    
T  7975417 aaacccatttaggttggcctagtggtataggcttgggatctgggagtgtgctcctcctc 7975475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 13808954 - 13808904
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatctggc-gtgtgctcctcctc 225  Q
    ||||||||| |||||  ||||||||||||||||||| ||||||||||||||    
T  13808954 ttgggttggtctggtcttattgacttgggatctggcagtgtgctcctcctc 13808904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 42430335 - 42430388
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctc 222  Q
    |||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||    
T  42430335 aacccacttgggttggc-tggtggtattgacttgggatcttggagtgtgctcctc 42430388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 46518627 - 46518685
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    ||||||| |||||||||| | ||||||||| |||||||||| || ||||||||||||||    
T  46518627 aaacccacttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctc 46518685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 4222141 - 4222198
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||| |||||||||| | ||||||||| |||||||||| || ||||||||||||||    
T  4222141 aacccacttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctc 4222198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 14339610 - 14339667
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||| |||| ||||||||||||||||| |||||||| | || ||||||||||||||    
T  14339610 aacccagttggattggcctggtggtattggcttgggatttgggagtgtgctcctcctc 14339667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 11612307 - 11612355
Alignment:
Q  177 tgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcct 224  Q
    |||||||||||||||||||| |||||||| || || |||||||||||||    
T  11612307 tgggttggcctggtggtattcacttgggagctgggagtgtgctcctcct 11612355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 17554454 - 17554486
Alignment:
Q  173 catttgggttggcctggtggtattgacttggga 205  Q
    ||||||||||||||||||| |||||||||||||    
T  17554454 catttgggttggcctggtgatattgacttggga 17554486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 32157191 - 32157248
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctcctc 225  Q
    ||||||||||||||||||||||||||||||||||||| | ||| || |||||||||||    
T  32157191 aacccatttgggttggcctggtggtattgacttgggaccttggagtatgctcctcctc 32157248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 23361725 - 23361668
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||| |||||||| |||||||||||||||||||||| | || ||||||||||||||    
T  23361725 aacccacttgggttgacctggtggtattgacttgggatatgggagtgtgctcctcctc 23361668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 16852339 - 16852399
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||||| |||||||||||| ||||||||| ||||||| || || ||||||||||||||||    
T  16852339 aaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcga 16852399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 968362 - 968421
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    |||||| ||| |||||||||||||||||| ||||||| || || ||||||||||||||||    
T  968362 aacccacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcga 968421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 20994534 - 20994479
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcc 223  Q
    |||||| |||||||||||| ||||||||||||||||| || || ||||||||||||    
T  20994534 aacccacttgggttggcctagtggtattgacttgggacctgggagtgtgctcctcc 20994479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 19703564 - 19703506
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctc 225  Q
    ||||||| |||||||||||| ||||||||| ||||||| ||| | ||||||||||||||    
T  19703564 aaacccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctc 19703506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 26688865 - 26688922
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatc-tggcgtgtgctcctcctc 225  Q
    |||||| |||||||||||||||||| ||| ||||||| | ||| ||||||||||||||    
T  26688865 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctc 26688922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 4830486 - 4830546
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcga 227  Q
    ||||||| |||||||||||||||||||||   |||||||||| | ||||| ||||||||||    
T  4830486 aaacccacttgggttggcctggtggtatttgtttgggatctgagagtgtgttcctcctcga 4830546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 22269013 - 22268973
Alignment:
Q  165 accaaacccatttgggttggcctggtggtattgacttggga 205  Q
    |||||||||| |||||||||||||||||| ||| |||||||    
T  22269013 accaaacccacttgggttggcctggtggtgttggcttggga 22268973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 39714991 - 39715051
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||||| |||||||||| ||||||||||||||||||| || || ||||||||||||||||    
T  39714991 aaacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcga 39715051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 37480073 - 37480132
Alignment:
Q  167 caaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctc 225  Q
    |||||||| |||||||||||||||||||||| ||||||| ||| | ||||||||||||||    
T  37480073 caaacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctc 37480132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 34041665 - 34041607
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctc 225  Q
    ||||||| |||||||||||| ||||||||||||| ||||||| | ||||||||||||||    
T  34041665 aaacccacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctc 34041607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 29197455 - 29197391
Alignment:
Q  166 ccaaacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctcgatg 229  Q
    ||||||||| |||||||||| ||||||||||||||||||| |  || ||||||||||||| ||||    
T  29197455 ccaaacccacttgggttggcttggtggtattgacttgggacttgggagtgtgctcctccttgatg 29197391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 3001386 - 3001435
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcct 224  Q
    |||||||||||| |||||||||||||| ||||| || |||||||||||||    
T  3001386 ttgggttggcctagtggtattgacttgagatctaggagtgtgctcctcct 3001435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 4439055 - 4438998
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctc 225  Q
    |||||| ||||||||||||  ||||||| |||||||||||| | ||||||||||||||    
T  4439055 aacccacttgggttggcctaatggtattaacttgggatctgagagtgtgctcctcctc 4438998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 25931005 - 25931034
Alignment:
Q  168 aaacccatttgggttggcctggtggtattg 197  Q
    ||||||||||||||||||||||||||||||    
T  25931005 aaacccatttgggttggcctggtggtattg 25931034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 42327471 - 42327414
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||| |||||||||||| ||||||||| ||||||| || || ||||||||||||||    
T  42327471 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 42327414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 7799112 - 7799052
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctcga 227  Q
    ||||||| |||||||| ||||||||||||| ||||||| |  || ||||||||||||||||    
T  7799112 aaacccacttgggttgtcctggtggtattggcttgggacttgggagtgtgctcctcctcga 7799052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 16918653 - 16918597
Alignment:
Q  170 acccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    ||||| |||||||||||| |||||||||  ||||||||| || ||||||||||||||    
T  16918653 acccacttgggttggcctagtggtattggtttgggatctgggagtgtgctcctcctc 16918597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 18259730 - 18259786
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcct 224  Q
    |||||||||| |||||||||||||||||| |||| ||| || | |||||||||||||    
T  18259730 aacccatttgagttggcctggtggtattggcttgagatttgagagtgtgctcctcct 18259786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 32106566 - 32106602
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttggga 205  Q
    |||||| |||||||||||||||||| |||||||||||    
T  32106566 aacccacttgggttggcctggtggtgttgacttggga 32106602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 9241101 - 9241042
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctgg-cgtgtgctcctcctcga 227  Q
    |||||| |||||||||||||||||||||| ||||||||||||  |||||||||| |||||    
T  9241101 aacccacttgggttggcctggtggtattggcttgggatctggtagtgtgctcctgctcga 9241042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 47044717 - 47044776
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctg-gcgtgtgctcctcctcga 227  Q
    |||||| |||| ||||||||||||||||||||||||||||| | || |||||||||||||    
T  47044717 aacccacttggattggcctggtggtattgacttgggatctgagagtttgctcctcctcga 47044776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 51250599 - 51250557
Alignment:
Q  168 aaacccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  51250599 aaacccacttgggttggcctggtggtattggcttgggatctgg 51250557  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 28635696 - 28635752
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcct 224  Q
    |||||| |||||||| |||||||||| ||||||||||||| || |||||||||||||    
T  28635696 aacccacttgggttgtcctggtggtactgacttgggatctgggagtgtgctcctcct 28635752  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 19238653 - 19238594
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttggga-tctggcgtgtgctcctcctcga 227  Q
    |||||| |||||||||||||||||||||| ||||||| |  || ||||||||||||||||    
T  19238653 aacccacttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcga 19238594  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 27965588 - 27965545
Alignment:
Q  167 caaacccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||    
T  27965588 caaacccacttgggttggcctagtggtattggcttgggatctgg 27965545  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 51948480 - 51948539
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    |||||| |||||||| |||||| ||||||||||||||||| || |||||| |||||||||    
T  51948480 aacccacttgggttgtcctggtagtattgacttgggatctaggagtgtgcccctcctcga 51948539  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 19229283 - 19229225
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctggcgtgtgctcctcctcga 227  Q
    ||||||||||||||||||||||||||||| | |||||  | |  |||||||||||||||    
T  19229283 aacccatttgggttggcctggtggtattggcctgggacttagaatgtgctcctcctcga 19229225  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 37109427 - 37109370
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctc 225  Q
    |||||| |||||||||||| ||||||||| ||||||| || || ||||||||||||||    
T  37109427 aacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 37109370  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 55427276 - 55427235
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    |||||| |||||||||||||||||||||| ||||||| ||||    
T  55427276 aacccacttgggttggcctggtggtattggcttgggacctgg 55427235  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 13496241 - 13496277
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttggga 205  Q
    |||||| |||||||||| |||||||||||||||||||    
T  13496241 aacccacttgggttggcatggtggtattgacttggga 13496277  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 21660213 - 21660161
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||||||| ||||||||||||||||| ||||| || |||||||| |||||||    
T  21660213 ttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcga 21660161  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 21668977 - 21668925
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||||||| ||||||||||||||||| ||||| || |||||||| |||||||    
T  21668977 ttgggttggtctggtggtattgacttgagatctgggagtgtgctcttcctcga 21668925  T

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Target: scaffold0187 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 12498 - 12465
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttg 202  Q
    ||||||||||||||||||||||||||||||||||    
T  12498 aacccatttgggttggcctggtggtattgacttg 12465  T

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Target: scaffold0187; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 22826 - 22793
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttg 202  Q
    ||||||||||||||||||||||||||||||||||    
T  22826 aacccatttgggttggcctggtggtattgacttg 22793  T

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Target: scaffold0299 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 11535 - 11587
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||| |||||||||||||||| |||||||||| || ||||||||||||||||    
T  11535 ttgggatggcctggtggtattggcttgggatctgggagtgtgctcctcctcga 11587  T

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Target: scaffold0258 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 15399 - 15340
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    |||||| ||||||||| |||||||||||| ||||||| || || ||||||||||||||||    
T  15399 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcga 15340  T

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Target: scaffold0070 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 42596 - 42555
Alignment:
Q  169 aacccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    |||||| |||||||||||| ||||||||||||||| ||||||    
T  42596 aacccagttgggttggcctagtggtattgacttggaatctgg 42555  T

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Target: scaffold1367 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 909 - 857
Alignment:
Q  176 ttgggttggcctggtggtattgacttgggatct-ggcgtgtgctcctcctcga 227  Q
    ||||| |||||||||||||||| |||||||||| ||  |||||||||||||||    
T  909 ttggggtggcctggtggtattggcttgggatctgggaatgtgctcctcctcga 857  T

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Target: scaffold0417 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 10216 - 10260
Alignment:
Q  166 ccaaacccatttgggttggcctggtggtattgacttgggatctgg 210  Q
    ||||||||| ||||||||||||| || ||||| ||||||||||||    
T  10216 ccaaacccacttgggttggcctgatgatattggcttgggatctgg 10260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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