View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_high_36 (Length: 214)
Name: NF11700_high_36
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_high_36 |
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| [»] scaffold0697 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 10642048 - 10641872
Alignment:
| Q |
20 |
acacccacatttcttcaacaggatcaaaatcatcaacaaggtcaaacaaaccatttttgctaaaaattattaaggcatctaagcaaatatcaaatcagct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
10642048 |
acacccacatttcttcaacaggatcaaaatcatcaacaaggtcaaacaaaccatttttgctaaaaactattcaggcatctaagcaaatatcaaatcagct |
10641949 |
T |
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| Q |
120 |
cttaaaaattacaaatggttcaatgttgagaaaaagcaataagcaacaacagacactagaacatcataaaacactct |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10641948 |
cttaaaaattacaaatggttcaatgttgagaaaaagcaataagcaacaacagacactagaacatcataaaacactct |
10641872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 32713638 - 32713739
Alignment:
| Q |
99 |
taagcaaatatcaaatcagctcttaaaaattacaaatggttcaatgttgagaaaaagcaataagcaacaacagacactagaacatcataaaacactctct |
198 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||| |
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| T |
32713638 |
taagaaaatatcaaatcagctcttaaaaattacaaatggttcaatgttgagaaaaagcaataagcaacaacaaacattagaacatcataaaacgctttct |
32713737 |
T |
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| Q |
199 |
gc |
200 |
Q |
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|| |
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| T |
32713738 |
gc |
32713739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 22906113 - 22905933
Alignment:
| Q |
20 |
acacccacatttcttcaacaggatcaaaatcatcaacaaggtcaaacaaaccatttttgctaaaaattattaaggcatctaagcaaatatcaaatcagct |
119 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22906113 |
acacccacatttcttcaataggatcaaaatcatcaacaaggtcaaacaaaccatttttgctaaaaattattcaggcatctaagcaaatatcaaatcagct |
22906014 |
T |
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| Q |
120 |
cttaaaaattacaaatggttcaatgttgagaaaaagcaataagcaacaacagacactagaacatcataaaacactctctgc |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22906013 |
cttaaaaattacaaatggttcagtgttgagaaaaagcaataagcaacaacagacactagaacatcataaaatactctctgc |
22905933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 21531976 - 21532154
Alignment:
| Q |
20 |
acacccacatttcttcaacaggatcaaaatcatcaacaaggtcaaacaaaccatttttgctaaaaattattaaggcatctaagcaaatatcaaatcagct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |
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| T |
21531976 |
acacccacatttcttcaacaggatcaaaataatcaacaaggtcaaacaaaccatttttgctaaaaatgattcaggcatctaagcaaacatcaaatcagct |
21532075 |
T |
|
| Q |
120 |
cttaaaaattacaaatggttcaatgttgagaaaaagcaataagcaacaacagacactagaacatcataaaacactctct |
198 |
Q |
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|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21532076 |
ctgaaaaagtacaaatggttcaatgtcgagaaaaagcaataagcaacaacagacactagaacatcataaaacactctct |
21532154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 2931 - 3109
Alignment:
| Q |
20 |
acacccacatttcttcaacaggatcaaaatcatcaacaaggtcaaacaaaccatttttgctaaaaattattaaggcatctaagcaaatatcaaatcagct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |
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| T |
2931 |
acacccacatttcttcaacaggatcaaaataatcaacaaggtcaaacaaaccatttttgctaaaaatgattcaggcatctaagcaaacatcaaatcagct |
3030 |
T |
|
| Q |
120 |
cttaaaaattacaaatggttcaatgttgagaaaaagcaataagcaacaacagacactagaacatcataaaacactctct |
198 |
Q |
| |
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|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3031 |
ctgaaaaagtacaaatggttcaatgtcgagaaaaagcaataagcaacaacagacactagaacatcataaaacactctct |
3109 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 13331344 - 13331429
Alignment:
| Q |
20 |
acacccacatttcttcaacaggatcaaaatcatcaacaaggtcaaacaaaccatttttgctaaaaattattaaggcatctaagcaa |
105 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13331344 |
acacccacatttcttccacaggatcaaaatcatcaacaaggtcaaacaaaccatttttgctaaaaattattcaggcatctaagcaa |
13331429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 13342259 - 13342344
Alignment:
| Q |
20 |
acacccacatttcttcaacaggatcaaaatcatcaacaaggtcaaacaaaccatttttgctaaaaattattaaggcatctaagcaa |
105 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13342259 |
acacccacatttcttccacaggatcaaaatcatcaacaaggtcaaacaaaccatttttgctaaaaattattcaggcatctaagcaa |
13342344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 5671787 - 5671872
Alignment:
| Q |
20 |
acacccacatttcttcaacaggatcaaaatcatcaacaaggtcaaacaaaccatttttgctaaaaattattaaggcatctaagcaa |
105 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
5671787 |
acacccacatttcttccacaggatcaaaatcatcaacaaggtcaaacaaaccattttcgctaaaaattattcaggcatctaagcaa |
5671872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 13756331 - 13756411
Alignment:
| Q |
25 |
cacatttcttcaacaggatcaaaatcatcaacaaggtcaaacaaaccatttttgctaaaaattattaaggcatctaagcaaa |
106 |
Q |
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|||||||||||| || |||||||||||||||| ||| ||||||||||| |||| || | ||| || ||||||||||||||| |
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| T |
13756331 |
cacatttcttcatcaagatcaaaatcatcaac-aggccaaacaaaccaattttattacagattgttcaggcatctaagcaaa |
13756411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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