View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_high_4 (Length: 914)
Name: NF11700_high_4
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 52472401 - 52471832
Alignment:
| Q |
1 |
catagagtcacaaccaatggaaaacgctaaaaaa--cggtgattctgtttggtgaggtagaggtaaacattgaagcctttgt---ataatacttaagtgg |
95 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52472401 |
catagagtcacaaccaatggaaaacgctaaaaaaaacggtgattctgtttggtgaggtagaggtaaacattgaagcctttgtgtaataatacttaagtgg |
52472302 |
T |
|
| Q |
96 |
aattgacattatttttagagtgggttgcttgcagaccatcggaaaggtcgtggtgaattggaaaaatatgttgagaagctctcagcataaaggaaaatag |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52472301 |
aattgacattatttttagagtgggttgcttgcagaccatcggaaaggtcgtggtgaattggaaaaatatgttgagaagctctaagcataaaggaaaatag |
52472202 |
T |
|
| Q |
196 |
agacatatcaaaacataggcaacaatcgacgggtgagactgcctccttctataccttgctgaatggtgttactaagaaggatggggttttaaattggcta |
295 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52472201 |
agacatatcaaaacataggcaacaatcgacggatgagactgcctccttctataccttgctgaatggtgttactaagaaggatggggttttaaattggcta |
52472102 |
T |
|
| Q |
296 |
acaaaagaagggtgagtttctgtctaaacagcagcaagcagacatgacagttactatacggtgttaaaagagatcacaaaacacgtctcactgtaccacc |
395 |
Q |
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| T |
52472101 |
acaaaagaagggtgagtttctgtctaaacagcagcaagcagacatgacagttactatacggtgttaaaagagatcacaaaacacgtctcactgtaccacc |
52472002 |
T |
|
| Q |
396 |
acactcagcctatattctctcccaatgttgggcttccaagggcctcaatccaacacttggaccatatcctgaaccttcatttctaacacagatccttggc |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
52472001 |
acactcagcctatattctctcccaatgttgggcttccaagggcctcaatccaacacttggaccattgtgttctccttcatttctaacacagatccttggc |
52471902 |
T |
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| Q |
496 |
tgtcaacgttgtttaatttatgggataccaaaaggtaaccattagaagactcttttgcatttacggtcca |
565 |
Q |
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| T |
52471901 |
tttcaacattgtttaatttatgggataccaaaaggtaacctttagaagactcttttgcatttacggtcca |
52471832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 662 - 744
Target Start/End: Complemental strand, 41485559 - 41485478
Alignment:
| Q |
662 |
aataacgtcttacatgaactagaacttgattaatggcttcaattaccttccgctgttgtacttttactaactttttcagcaat |
744 |
Q |
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| T |
41485559 |
aataaagtcttatatgaactaaaccttaattaatggattcaattacctttccc-gtgttacttttactaactttttcagcaat |
41485478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 547
Target Start/End: Original strand, 38793987 - 38794036
Alignment:
| Q |
498 |
tcaacgttgtttaatttatgggataccaaaaggtaaccattagaagactc |
547 |
Q |
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| T |
38793987 |
tcaacattgattgatttatgcgataccaaaaggtaaccattagaggactc |
38794036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 783 - 820
Target Start/End: Complemental strand, 41483361 - 41483324
Alignment:
| Q |
783 |
caatcacatcatgcataatggcctacaaaagtaaaata |
820 |
Q |
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| T |
41483361 |
caatcacatcatgcaaaacggcctacaaaagtaaaata |
41483324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 684 - 760
Target Start/End: Original strand, 12024507 - 12024582
Alignment:
| Q |
684 |
aacttgattaatggcttcaattaccttccgctgttgtacttttactaactttttcagcaatcatcaccaaatcctca |
760 |
Q |
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| T |
12024507 |
aacttgatgaatggtttcaattaccttcctcttgt-tacttttactaactttttcaccaactatcactaaatcctca |
12024582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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