View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11700_low_10 (Length: 535)
Name: NF11700_low_10
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Original strand, 29207576 - 29208087
Alignment:
| Q |
18 |
atatcaagaccacctttttcaaaattatttgaaaataggaatttgtctttctatatatagaagcaaatcaacacttaccaaatagtggttcaatatatct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29207576 |
atatcaagaccacctttttcaaaattatttataaataggaatttgtctttctatatatagaagcaaatcaacacttaccaaatagtggttcaatatatct |
29207675 |
T |
|
| Q |
118 |
atcatttgtagcataatacttttaacaaagtttaaagagatatgtgtagtttaggcaattgtgatttaaagaaacgatgacaagtagaaagttgcatgga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29207676 |
atcatttgtagcataatacttttaacaaagtttaaagagatatgtgtagtttaggcaattgtgatttaaagaaatgatgacaagtagaaagttgcatgga |
29207775 |
T |
|
| Q |
218 |
taaactttgttaggttagttgtactttcaatatatcacatat----gtcgtatgcatgcttttctaaaatatatatacttttatattatgtcaattatga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29207776 |
taaactttgttaggttagttgtactttcaatatatcacatatatatgtcgtatgcatgcttttctaaaatatac-----tttatattatgtcaattatga |
29207870 |
T |
|
| Q |
314 |
ttcgtcacacatttgtgtgcttgtgctgatttattatttttatatatgtaaattatcatttcacatatatgtgttattaaaagcacaaggtggcaatgca |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29207871 |
ttcgtcacacatttgtgtgcttgtgctgatttattatttttatatatgtaaattatcatttcacatatatgtgttattaaaagcacaaggtgacaatgca |
29207970 |
T |
|
| Q |
414 |
actttgtttcatacatatataattgtgcttatttcaaaacaaaggttgtatcactat----ctagtgaagtatgcaagctgttttgttgcttaagaaaca |
509 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29207971 |
ac-ttgtttcatacatatataattgtgcttatttcaaaacaaaggttgtatcactatctagctagtgaagtatgcaagatgttttgttgcttaagaaaca |
29208069 |
T |
|
| Q |
510 |
cctcccattcatctcatt |
527 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
29208070 |
cctcccattcatctcatt |
29208087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 431
Target Start/End: Complemental strand, 38378369 - 38378289
Alignment:
| Q |
349 |
atttttatatatgtaaattatcatttcacatatatgtgttattaaaagcacaaggtggcaatgcaactttgtttcatacatat |
431 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||| |||| |||| | |||||| ||||||||||||||| | | ||||||||| |
|
|
| T |
38378369 |
atttttatacatgtaacttatcatttctcatatgtgtg--attagaggcacaaagtggcaatgcaacttcgctccatacatat |
38378289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University