View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11700_low_12 (Length: 453)

Name: NF11700_low_12
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11700_low_12
NF11700_low_12
[»] chr4 (3 HSPs)
chr4 (350-427)||(570435-570512)
chr4 (355-427)||(1524429-1524501)
chr4 (368-404)||(371027-371063)
[»] chr8 (1 HSPs)
chr8 (360-427)||(21235642-21235709)
[»] chr6 (8 HSPs)
chr6 (18-69)||(12102743-12102794)
chr6 (253-293)||(12102377-12102417)
chr6 (357-424)||(6394951-6395018)
chr6 (357-424)||(6426598-6426665)
chr6 (195-241)||(28029057-28029103)
chr6 (127-168)||(12102683-12102724)
chr6 (355-427)||(6432245-6432317)
chr6 (395-427)||(12102350-12102382)
[»] chr3 (2 HSPs)
chr3 (355-431)||(51113724-51113800)
chr3 (368-404)||(514684-514720)
[»] chr1 (1 HSPs)
chr1 (368-424)||(19468455-19468511)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 570512 - 570435
Alignment:
Q  350 ttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaag 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  570512 ttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaag 570435  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 427
Target Start/End: Original strand, 1524429 - 1524501
Alignment:
Q  355 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaag 427  Q
    ||||||||||||||||||||||||||||||||  |||| || ||| |  |||| |||||| ||||||||||||    
T  1524429 agatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaacttcatggaatgaactttgaag 1524501  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 371063 - 371027
Alignment:
Q  368 ttaggcatttgaacttagctcactgctcaaaagtgaa 404  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  371063 ttaggcatttgaacttagcccactgctcaagagtgaa 371027  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 21235709 - 21235642
Alignment:
Q  360 ttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaag 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  21235709 ttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgtgtggagtgaactttgaag 21235642  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 12102794 - 12102743
Alignment:
Q  18 cagagagtcggctcattacctgaccggagcatcactcttgaggtccttgtac 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12102794 cagagagtcggctcattacctgaccggagcatcactcttgaggtccttgtac 12102743  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 12102417 - 12102377
Alignment:
Q  253 gcagaaaatcactagagctagtcactatagtggcgcaaaag 293  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12102417 gcagaaaatcactagagctagtcactatagtggcgcaaaag 12102377  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 6395018 - 6394951
Alignment:
Q  357 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttg 424  Q
    ||||||||| ||||  |||||||||||||||  ||| |||||||||||||| |||||| |||||||||    
T  6395018 atgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttg 6394951  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 6426665 - 6426598
Alignment:
Q  357 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttg 424  Q
    ||||||||| ||||  |||||||||||||||  ||| ||||| |||||||| |||||| |||||||||    
T  6426665 atgttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttg 6426598  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 28029057 - 28029103
Alignment:
Q  195 catgttattggttcattctggtacctcttcggtctagaggcgagtaa 241  Q
    |||||| ||||||||| |||||||||||| |||||||||| ||||||    
T  28029057 catgttgttggttcatgctggtacctctttggtctagaggtgagtaa 28029103  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 12102724 - 12102683
Alignment:
Q  127 cgggctcactttcgagtcattttgggcaaatcacataataat 168  Q
    |||||||||||| |||| ||||||||||||||||||| ||||    
T  12102724 cgggctcacttttgagttattttgggcaaatcacatattaat 12102683  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 427
Target Start/End: Complemental strand, 6432317 - 6432245
Alignment:
Q  355 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaag 427  Q
    ||||||||||||||||  ||||||||||||||  | ||   ||||||||| || |||||| ||||||||||||    
T  6432317 agatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaag 6432245  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 427
Target Start/End: Complemental strand, 12102382 - 12102350
Alignment:
Q  395 caaaagtgaaactgcatggagtgaactttgaag 427  Q
    |||||||||||||||||||| ||||||||||||    
T  12102382 caaaagtgaaactgcatggattgaactttgaag 12102350  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 51113724 - 51113800
Alignment:
Q  355 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcc 431  Q
    |||||||||||| ||||||||||||| |||||| |||| |||||| |||| || | |||| ||||||||||||||||    
T  51113724 agatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctcc 51113800  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 514684 - 514720
Alignment:
Q  368 ttaggcatttgaacttagctcactgctcaaaagtgaa 404  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  514684 ttaggcatttgaacttagcccactgctcaagagtgaa 514720  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 19468455 - 19468511
Alignment:
Q  368 ttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttg 424  Q
    |||||||||| |||||||| ||||| |||| |||||| || | ||||||||||||||    
T  19468455 ttaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttg 19468511  T

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