View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11700_low_13 (Length: 430)

Name: NF11700_low_13
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11700_low_13
NF11700_low_13
[»] chr8 (4 HSPs)
chr8 (318-415)||(37259259-37259352)
chr8 (179-256)||(37259064-37259141)
chr8 (8-105)||(37258893-37258990)
chr8 (255-284)||(37259185-37259214)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 318 - 415
Target Start/End: Original strand, 37259259 - 37259352
Alignment:
Q  318 cgtagtttataatgtgaaaatatatatggcataagatggaggaacgcgtggtgtgtagtgcgcatgcagtgtaaatgtgaatcaaaggtggcattgtt 415  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37259259 cgtagtttataatgtgaaaatat----ggcataagatggaggaacgcgtggtgtgtagtgcgcatgcagtgtaaatgtgaatcaaaggtggcattgtt 37259352  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 37259064 - 37259141
Alignment:
Q  179 gttttgttagtgtgattttcatgtcctatatcttttatgttatggcatcaaaaaatgaacattgtgttatatttgtgc 256  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37259064 gttttgttagtgtgattttcatgtcctatatcttttgtgttatggcatcaaaaaatgaacattgtgttatatttgtgc 37259141  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 37258893 - 37258990
Alignment:
Q  8 gacgttggatgtaggcttcataggatttgtaaccggatcgtattgttaggtcnnnnnnngatgtttttgatgttgttatggtattgatgggttgtgtg 105  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||       |||||||||||||||||| ||||||||||||||||||||    
T  37258893 gacgttggatgtaggcttcataggacttgtaaccgggtcgtattgttaggtctttttttgatgtttttgatgttgttgtggtattgatgggttgtgtg 37258990  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 37259185 - 37259214
Alignment:
Q  255 gccatgaaaattctggagtgagatatgatt 284  Q
    ||||||||||||||||||||||||||||||    
T  37259185 gccatgaaaattctggagtgagatatgatt 37259214  T

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