View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_14 (Length: 423)
Name: NF11700_low_14
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 287
Target Start/End: Complemental strand, 22159160 - 22158885
Alignment:
| Q |
4 |
aatgagaagagtacatgcacatgatgttttctccatttagaccactttccaagtaacataggaggaagcaagataagtgaacacgattcaattttatgtg |
103 |
Q |
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| T |
22159160 |
aatgagaagagtacatgcacatgatgttttctccatttagaccactttccaag--------gaggaagcaagataagtgaacacgattcaatttgatgtg |
22159069 |
T |
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| Q |
104 |
agattagatctaaaatgtaagcatagtaatgtttgagataataatgaattaattatagtccacgttggacacgtgattggtgacgttgtaatggtccctt |
203 |
Q |
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| T |
22159068 |
agattagatctcaaatgtaagcatagtaatgtttgagataataatgaattaattatagtccacgttggacatgtgattggtaacgttgtaatggtccctt |
22158969 |
T |
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| Q |
204 |
tttgttctcttcctcatgtttcttatcacttatatatttggtaatattacaagtttcttcatttgcattgtaagtgtctatctt |
287 |
Q |
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| T |
22158968 |
tttgttctcttcctcatgtttcttatcacttatatatttggtaatattacaagtttctacatttgcattgtaaatgtctatctt |
22158885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 302 - 411
Target Start/End: Complemental strand, 22158808 - 22158699
Alignment:
| Q |
302 |
taaattataatggaaatctaagattggaagacttgaaaatggtcaaaaattatgcatcaaacttcatttattatttttgtaattcctaatctaactacat |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22158808 |
taaattataatggaaatctaagattggaagacttgaaaatggtcaaaaattatgcatcaaacttcatttattatttttgtaattcctaatctaactacat |
22158709 |
T |
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| Q |
402 |
gtgatttgat |
411 |
Q |
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|||||||||| |
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| T |
22158708 |
gtgatttgat |
22158699 |
T |
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