View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11700_low_16 (Length: 379)

Name: NF11700_low_16
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11700_low_16
NF11700_low_16
[»] chr2 (12 HSPs)
chr2 (19-379)||(2349879-2350239)
chr2 (111-379)||(2329671-2329939)
chr2 (233-379)||(2326078-2326224)
chr2 (268-373)||(2302558-2302663)
chr2 (242-373)||(2320233-2320364)
chr2 (242-372)||(2292913-2293043)
chr2 (242-373)||(2309244-2309375)
chr2 (109-172)||(2302411-2302474)
chr2 (108-195)||(2325965-2326052)
chr2 (122-188)||(2292805-2292871)
chr2 (125-201)||(2309139-2309215)
chr2 (122-202)||(2320125-2320205)


Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 2349879 - 2350239
Alignment:
Q  19 aatgaatgtgtaatattattattcttgaccagcaagataaccattcacaataaataaatctttatttcaaactctgtgttgcacaacacaaaacttttac 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2349879 aatgaatgtgtaatattattattcttggccagcaagataaccattcacaataaataaatctttatttcaaactctgtgttgcacaacacaaaatttttac 2349978  T
Q  119 gtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaaccaccacaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2349979 gtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaaccaccgcaa 2350078  T
Q  219 ccctnnnnnnnggtccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacac 318  Q
    ||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2350079 ccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacac 2350178  T
Q  319 caaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgac 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2350179 caaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgac 2350239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 111 - 379
Target Start/End: Original strand, 2329671 - 2329939
Alignment:
Q  111 acttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccaccaacaaaac 210  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | || ||| |  |||||||||| |||||    
T  2329671 acttttacgtaatggaaacatggttcatcgcacttgtttctctctgcatcatcttcctcatcagagccaccctttcatccatttccaccaccaagaaaac 2329770  T
Q  211 caccacaaccctnnnnnnnggtccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaacc 310  Q
    |||| |||||||       |||||||| ||||| || ||||||||||| |||| |||||| ||||||||||   |||| || ||||||||| ||| |||     
T  2329771 caccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaact 2329870  T
Q  311 ctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgac 379  Q
    || ||  ||||| ||||||||||||||| ||| || ||| |||  |||||||||||||||||| |||||    
T  2329871 cttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatcgccgac 2329939  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 233 - 379
Target Start/End: Original strand, 2326078 - 2326224
Alignment:
Q  233 ccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtccta 332  Q
    ||||| || ||||||||||||||||| || | |||||||||||||||||  |||||||| ||||||||| ||||||| |||||  ||||| |||||||||    
T  2326078 ccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtccta 2326177  T
Q  333 tcatcactctcaaaatcagttaccgaccttccattttcatctccgac 379  Q
    |||||| ||| || ||| | | | |||||||||||| ||||||||||    
T  2326178 tcatcaatcttaatatcggctccagaccttccatttacatctccgac 2326224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 268 - 373
Target Start/End: Original strand, 2302558 - 2302663
Alignment:
Q  268 gctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccatt 367  Q
    |||||||||| |||| |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||||| | ||| |||  ||||||||||||    
T  2302558 gctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccatt 2302657  T
Q  368 ttcatc 373  Q
    ||||||    
T  2302658 ttcatc 2302663  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 373
Target Start/End: Original strand, 2320233 - 2320364
Alignment:
Q  242 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 341  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||     
T  2320233 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactg 2320332  T
Q  342 tcaaaatcagttaccgaccttccattttcatc 373  Q
    || | ||| |||  ||||||||||||||||||    
T  2320333 tccatatcggttctcgaccttccattttcatc 2320364  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 242 - 372
Target Start/End: Original strand, 2292913 - 2293043
Alignment:
Q  242 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 341  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||     
T  2292913 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactg 2293012  T
Q  342 tcaaaatcagttaccgaccttccattttcat 372  Q
    || | ||| |||  |||||||||||||||||    
T  2293013 tccatatcggttctcgaccttccattttcat 2293043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 373
Target Start/End: Original strand, 2309244 - 2309375
Alignment:
Q  242 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 341  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||| |     
T  2309244 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattg 2309343  T
Q  342 tcaaaatcagttaccgaccttccattttcatc 373  Q
    || | ||| |||  | ||||||||||||||||    
T  2309344 tccatatcggttctcaaccttccattttcatc 2309375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 2302411 - 2302474
Alignment:
Q  109 aaacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatc 172  Q
    ||||||||||  ||||||||||||||||||||  ||  || |||||||||||||||||||||||    
T  2302411 aaacttttacacaatggaaacatggttcattgtcctcattactctctgcatcatcttcctcatc 2302474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 2325965 - 2326052
Alignment:
Q  108 aaaacttttacgtaatggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcac 195  Q
    ||||||||||||| ||||||||||||||||| |  ||  || |||| ||||||||||||||| ||| ||||||  |||||||| ||||    
T  2325965 aaaacttttacgtgatggaaacatggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcac 2326052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 2292805 - 2292871
Alignment:
Q  122 atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcct 188  Q
    |||||| ||||||||||||  || ||| |||| |||||||||||||| |||||||||||| ||||||    
T  2292805 atggaaccatggttcattgtcctcgttactctttgcatcatcttccttatcagagccatcctctcct 2292871  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 2309139 - 2309215
Alignment:
Q  125 gaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccac 201  Q
    |||||||||||||| |  || ||| ||||||||||||||||||| |||||||||||  |||||| | |||| |||||    
T  2309139 gaaacatggttcatagtcctcgttactctctgcatcatcttccttatcagagccatgctctccttcttcacaaccac 2309215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 2320125 - 2320205
Alignment:
Q  122 atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccatcttctcctccctcaccaccacc 202  Q
    ||||||||||||||||| |  || ||| | || |||||||||||||| |||||||||||| |||||| | |||| ||||||    
T  2320125 atggaaacatggttcatcgtcctcgttacgctatgcatcatcttccttatcagagccatcctctccttcttcacaaccacc 2320205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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