View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_17 (Length: 368)
Name: NF11700_low_17
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 319
Target Start/End: Original strand, 401764 - 402069
Alignment:
| Q |
14 |
ggacatcacagccctctcccattccagcacaacagccacatcccatagccataggcgctatattggcaagacttcagaggtttgttccacctgaaagggt |
113 |
Q |
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| T |
401764 |
ggacatcacagccctctcccattccagcacaacagccacatcccatagccataggcgctatattggcaagacttcagaggtttgttccatctgaaagggt |
401863 |
T |
|
| Q |
114 |
tcgaagattgagacctataatgtttcgttgaatgaaatctccgaaaaccagcaaatatttattctggcatctcataaatacaatctcgattttattccca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
401864 |
tcgaagattgagacctataatgtttcgttgaatgaaatctccgaaaaccagcaaatatttattctggcatctcataaatacaatctcgattttatccaca |
401963 |
T |
|
| Q |
214 |
gttaaaccagccggcttcaagcaattgagagagnnnnnnnnggtcttccaacacccttcaaacacagaaaccaattgtttgggttagcagcctcccagca |
313 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401964 |
gttaaaccagccggcttcaagcaattgagagagttttttttggtcttccaacacccttcaaacacagaaaccaattgtttgggttagcagcctcccagca |
402063 |
T |
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| Q |
314 |
caccat |
319 |
Q |
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|||||| |
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| T |
402064 |
caccat |
402069 |
T |
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