View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_18 (Length: 364)
Name: NF11700_low_18
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 2 - 354
Target Start/End: Original strand, 31698947 - 31699299
Alignment:
| Q |
2 |
aaaaatacactccttggatctgaaatccattttaggctgattgtaaggcatcagaaatgaaaagcaagcatgtccgatgttcttaaatccttgttatgag |
101 |
Q |
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| T |
31698947 |
aaaaatacactccttggatctgaaatccattttaggctgattgtaaggcatcagaaatgaaaagcaagcatgtccgatgttcttaaatccttgttatgag |
31699046 |
T |
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| Q |
102 |
gtatggtaggaacttattaagtgtggcatggggaatataattagattgcagatgaacggagtctgttgataggtatacagcaatgtaaaaactgaaatcc |
201 |
Q |
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| T |
31699047 |
gtagggtaggaacttattaagtgtggcatggggaatataattagattgctgatgaacggagtctgttgataggtatacagcaatgcaaaaactgaaatcc |
31699146 |
T |
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| Q |
202 |
cattaggaaagcggtatggaggagggatgggcaagtagagttagacccttttatactatttgtcgatttatattcaaccaaaccattttggttagatgtg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
31699147 |
cattaggaaagcggtatggaggagggatgggcaagtagagttagacccttttatactatttgtcaatttattttcaaccaaaccattttggttagatgtg |
31699246 |
T |
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| Q |
302 |
ctagtcaatctatggatgatgccaaatttattgagaaattgtgcacaggttct |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31699247 |
ctagtcaatctatggatgatgccaaatttattgagaaattgtgcacaggttct |
31699299 |
T |
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