View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_19 (Length: 355)
Name: NF11700_low_19
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 2698844 - 2698540
Alignment:
| Q |
1 |
ggaaagttttaaacatttggccaagaaatatgataagtaaattattcagatttatcaaaatggatgattagtaacataaatgaattgaat-attatattc |
99 |
Q |
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| T |
2698844 |
ggaaagttttaaacatttggccaagaaatatgataagtaaattattcagatttgtcaaaatggatatttggtaacataaatgaattgaatcattatatcc |
2698745 |
T |
|
| Q |
100 |
attaat----aacaccattactaatatcggcacttaattctcaaaacctctgttcaaattgtctaggtttgtgacgtgatgctatttcttttaaaatggt |
195 |
Q |
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| T |
2698744 |
attaattaataacaccattactaatatcgacactaaattctcaaaacttccgttcaaattgtctaggtttgtgacgtgatactatttcgtttaaaatagt |
2698645 |
T |
|
| Q |
196 |
tgatcaatatcgtcaccatcgttgatgtacagttgatatagatatgaatcatttgacagtttgaggttgtgctttggattgtaatgcttgaaagggcggt |
295 |
Q |
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| T |
2698644 |
tgatcgatatcgtcaccgtcattgatgtatagttgatataggtatgaatcatttgacagtttgaggttttgctttggactgtaatgcttgaaaggacggt |
2698545 |
T |
|
| Q |
296 |
gtctt |
300 |
Q |
| |
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||||| |
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| T |
2698544 |
gtctt |
2698540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 2698499 - 2698447
Alignment:
| Q |
298 |
cttatgtgtgagtgtttttgtcatagtaaatggtgggtacgtgtgcaattgct |
350 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
2698499 |
cttatgtgtgggtgttttcgtcatagtaaatggtgggtacgtgtgcaactgct |
2698447 |
T |
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