View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11700_low_22 (Length: 352)
Name: NF11700_low_22
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 107 - 307
Target Start/End: Complemental strand, 2719592 - 2719392
Alignment:
| Q |
107 |
attacacatgttagtaacttatgatcaatatgacttatagataactctaaacattagtatttaatatttaaaacatgactagatcaatttataaaataac |
206 |
Q |
| |
|
|||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2719592 |
attatacatgttagtatcctatgatgaatatgacttatagataactctaaacattagtatttaatatttaaaacatgacttgatcaatttataaaataac |
2719493 |
T |
|
| Q |
207 |
aatgtctaattttgttatcggggaataatgtcaaatattaaaccattacacatttttgaatccataaccatgttttatcacataaaacatagagtgcgaa |
306 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||| ||| |
|
|
| T |
2719492 |
aatgtctaattttgttttcgatgaataatgtcaaatattaaaccattacacatttttgaattcataaccatattttttattataaaacatagagtgtgaa |
2719393 |
T |
|
| Q |
307 |
t |
307 |
Q |
| |
|
| |
|
|
| T |
2719392 |
t |
2719392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 107 - 264
Target Start/End: Complemental strand, 2716498 - 2716341
Alignment:
| Q |
107 |
attacacatgttagtaacttatgatcaatatgacttatagataactctaaacattagtatttaatatttaaaacatgactagatcaatttataaaataac |
206 |
Q |
| |
|
|||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2716498 |
attatacatgttagtatcctatgatgaatatgacttatagataactctaaacattagtatataatatttaaaacatgacttgatcaatttataaaataac |
2716399 |
T |
|
| Q |
207 |
aatgtctaattttgttatcggggaataatgtcaaatattaaaccattacacatttttg |
264 |
Q |
| |
|
|||||||||| ||||| | || ||||||||| ||||||| | | |||||||||||| |
|
|
| T |
2716398 |
aatgtctaatgttgttttaggaaaataatgtctaatattatcctaatacacatttttg |
2716341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University