View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_23 (Length: 349)
Name: NF11700_low_23
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 33 - 328
Target Start/End: Original strand, 9502556 - 9502851
Alignment:
| Q |
33 |
cataggctgtaggaaggaaatggaggatgcggtgagtgtggggataggttttacgatgaaggatggagagaagtgtgatttcttcggtgtttatgatggt |
132 |
Q |
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| T |
9502556 |
cataggctgtaggaaggaaatggaggatgcggtgagtatggagataggttttacgatgaaggatggagagaagtgtgatttcttcggtgtttatgatggt |
9502655 |
T |
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| Q |
133 |
cacggtggtgctcaggtggcggtgtcgtgtagagagaggttgtataggattgtggcggaggaggtcgagatgtgttgggaggatagggaatgggattggg |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
9502656 |
cacggtggtgctcaggtggcggtgtcgtgtagagagaggttgtataggattgtggcggaggaggttgagatgttttgggaggatagggaatgggattggg |
9502755 |
T |
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| Q |
233 |
agagggtgatggaagggtgttttggtaaaatggatagggaggtggcgggtgatgccgcggttaggaccgtgggatccacggctgttgtggcggttg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9502756 |
agagggtgatggaagggtgttttggtaaaatggatagggaggtggcgggtgatgccacggttaggaccgtgggatccacggctgttgtggcggttg |
9502851 |
T |
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