View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_24 (Length: 342)
Name: NF11700_low_24
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 170 - 325
Target Start/End: Original strand, 35095932 - 35096087
Alignment:
| Q |
170 |
ttaaggtgcggcgtgcagcgatagaaggaagatgagatgttactgaggttgatcaagaacagcaatggaaggtggagagagatggaattgcatatttttg |
269 |
Q |
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| T |
35095932 |
ttaaggtgcggcgtgcagcgctagaaggaagatgagatgttactgaggttgatcaagaacagctatggaaggtggagagagatggaattgcatatttttg |
35096031 |
T |
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| Q |
270 |
agatggaggagaaagagaaacaaacgcaaggagcagaaagaaacaaagctaataat |
325 |
Q |
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| T |
35096032 |
agatggaggagaaagagaaacaaacgcaaggagcagaaagaaacaaagctaataat |
35096087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 35095763 - 35095881
Alignment:
| Q |
1 |
tttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaatagaaaagaagaaagtgatgaagaatgatggtgccataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095763 |
tttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaatagaaaagaagaaagtgatgaagaatgatggtgccataa |
35095862 |
T |
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| Q |
101 |
taataaaatatagtgaagg |
119 |
Q |
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||||||||||||||||||| |
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| T |
35095863 |
taataaaatatagtgaagg |
35095881 |
T |
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