View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_29 (Length: 287)
Name: NF11700_low_29
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 9502542 - 9502260
Alignment:
| Q |
1 |
catacgatagaggtcgctgttgttgttgataatgcttcacctgcaaataataaacaatgaaataatatgagacgcactgtcctcaacgattttccttgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
9502542 |
catacgatagaggtcgctgttgttgttgataatgcttcacctgcaaataataaacaatgaaataatatgagacgcactgtcctcaaggattttccgtgta |
9502443 |
T |
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| Q |
101 |
taataagctaacaacaaca---gtgtacctctccgttttgcttggacagctgatcatcttcctccgatgatgacgaagttgctaacgacaacgatatctc |
197 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
9502442 |
taataagctaacaacaacaacagtgtacctctccgttttgcttggacagctgatcatcttcctcagatgatgatgaagttgctaacgacaacgatatctc |
9502343 |
T |
|
| Q |
198 |
aaccgattcatgaatctctcgtcgcgcattctccgttttcagatcaccgtcatcggagccatttccgacgtggatctctgctt |
280 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9502342 |
aacagattcatgaatctctcgtcgcgcattctccgttttcagatcaccgtcatcggagccatttccgacgtggatctttgctt |
9502260 |
T |
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