View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_3 (Length: 976)
Name: NF11700_low_3
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 760; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 15 - 976
Target Start/End: Original strand, 35429405 - 35430366
Alignment:
| Q |
15 |
agaaatatggctgcactcaacatcgaagaatctggaacattggagatgaatgtgctactccgtagagttactacactcgttgttgaagaagatggattag |
114 |
Q |
| |
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|||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
35429405 |
agaaatatggttgcactcaacatcgaagaatgtggaacgttggagatgaatgtgctgctccgtagagttaccacactcgaggttgaagaagatggattag |
35429504 |
T |
|
| Q |
115 |
atcaatactatcaaagttctatttatcaacaaaatgtgggtttgtcaatgaaatcggatgttgaaactctttcaaattccaccgatgaatgttcaatttg |
214 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||||| || ||||||| |||||||||||| |||| ||||||||||||| |
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| T |
35429505 |
atcaatactatcaatgttctatttctcaacaaaatgttggtttgtcattgaaatcggttgatgaaactatttcaaattccaacgataaatgttcaatttg |
35429604 |
T |
|
| Q |
215 |
tttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattgctcagttgatctatggatgc |
314 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
35429605 |
tttggaggagttgcacaacgaatcgcagtcaaaactctttcatacaaaatgctctcatgtttttcataaagagtgtattgcccagttgatctatggatgc |
35429704 |
T |
|
| Q |
315 |
atcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttca |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429705 |
atcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttca |
35429804 |
T |
|
| Q |
415 |
ttgtttcaggtttattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgcttcgtctgtatt |
514 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35429805 |
ttgtttcaggtgtattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgctttgtctgtatt |
35429904 |
T |
|
| Q |
515 |
attgtggtgagagccactgattctagttattctttggctcttttttgtttgtatttttctgcaatcgcacttcttgttgattnnnnnnnnnnt-tcgcgt |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
35429905 |
attgtggtgagagccactgattctagttattctttggctcttttttgtttgtatttttctgcaatcgcacttcttgttgattaaaaaaaaaatatcgcgt |
35430004 |
T |
|
| Q |
614 |
attaaaata---agttataaagttcttattcttgttannnnnnnaactcaaatttccatgctttaaaattgttcaattatgttacttttttccctgtata |
710 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35430005 |
attaaaataattagttataaagttcttattcttgttatttttttaactcaaatttccatgctttaaaattgttcaattatgttacttttttccctgtata |
35430104 |
T |
|
| Q |
711 |
gattatctgaattagagagtagcttacatgcttgattactcaatataggttaaacaaacacnnnnnnnntactcttaaattccattacttcgcttttagg |
810 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
35430105 |
gattatctgaattagagagtatcttacatgcttgattactcaatataggttaaacaaacac----aaaatactcttaaatcccattacttcgcttttagg |
35430200 |
T |
|
| Q |
811 |
agcacttaggaaaaaagaagaatgtacacagagaaagtgtacgtcatctagaaaattttaatcatatgaatgtacatcatctagaaaatcttcagtagtc |
910 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35430201 |
agcacttaggaaaaaagaagaatgtacacagagaaagtgtacgtcatctagaaaattttaatcatatgaatgtacatcatctagaaaatcttcagcagtc |
35430300 |
T |
|
| Q |
911 |
acatagtttttcctgttagtaatcttaataatgatgtttggtagtttggaggggaggggaagggag |
976 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35430301 |
acatagtttttcccattagtaatcttaataatgatgtttggtagtttggaggggaggggaagggag |
35430366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 15 - 594
Target Start/End: Original strand, 35420266 - 35420845
Alignment:
| Q |
15 |
agaaatatggctgcactcaacatcgaagaatctggaacattggagatgaatgtgctactccgtagagttactacactcgttgttgaagaagatggattag |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35420266 |
agaaatatggctgcactcaacatcgaagaatctggaacattggagatgaatgtgctgctccttagagttactacactcgttgttgaagaagatggattag |
35420365 |
T |
|
| Q |
115 |
atcaatactatcaaagttctatttatcaacaaaatgtgggtttgtcaatgaaatcggatgttgaaactctttcaaattccaccgatgaatgttcaatttg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420366 |
atcaatactatcaaagttctatttatcaacaaaatgtgggtttgtcatcgaaatcggatgttgaaactctttcaaattccaccgatgaatgttcaatttg |
35420465 |
T |
|
| Q |
215 |
tttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattgctcagttgatctatggatgc |
314 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35420466 |
tttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctctcatatttttcataaagagtgtattgcccagttgatctatggatgc |
35420565 |
T |
|
| Q |
315 |
atcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttca |
414 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420566 |
atcaatcgttcaactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagtcccttgttca |
35420665 |
T |
|
| Q |
415 |
ttgtttcaggtttattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgcttcgtctgtatt |
514 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35420666 |
ttgtttcaggtgtattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgctttgtctgtatt |
35420765 |
T |
|
| Q |
515 |
attgtggtgagagccactgattctagttattctttggctcttttttgtttgtatttttctgcaatcgcacttcttgttga |
594 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35420766 |
attgtggtgagagccactgattctagttattctttggctcttttttgtttgtatgtttctgcaatcgcacttcttgttga |
35420845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 35423499 - 35423543
Alignment:
| Q |
249 |
ctctttcatacaaaatgctctcatatttttcataaagagtgtatt |
293 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
35423499 |
ctctttcatacaaaatgctctcatgtttttcatgaagagtgtatt |
35423543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 387
Target Start/End: Original strand, 25079673 - 25079888
Alignment:
| Q |
170 |
ggatgttgaaactctttcaaattccaccgatgaatgttcaatttgtttggaggagttgcacaacgaatcgcagtcagaactctttcatacaaaatgctct |
269 |
Q |
| |
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||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||| | || | ||| | | ||||||| || ||||| |||||| |
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| T |
25079673 |
ggatgttgaaactacttcaaattctaccgatcaatgttcaatttgtttgatggagtttcttaatggatcatatttagaactcctt-ttacaagatgctc- |
25079770 |
T |
|
| Q |
270 |
catatttttcataaagagtgtattgctcagttgatctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgag |
369 |
Q |
| |
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|||||||| ||||||||||| ||||| | | ||| ||| ||||||||||| |||| || | | |||||| ||| ||| |||||| ||||||| |||| |
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| T |
25079771 |
catattttccataaagagtgcattgccaaatggatatattgatgcatcaattgttcatcttcttgttcttgaccattgtatcgacatgagataaagtgaa |
25079870 |
T |
|
| Q |
370 |
tagagaagggacaatatg |
387 |
Q |
| |
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|||||| |||| ||||| |
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|
| T |
25079871 |
aagagaaaggactatatg |
25079888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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