View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11700_low_34 (Length: 247)

Name: NF11700_low_34
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11700_low_34
NF11700_low_34
[»] chr8 (8 HSPs)
chr8 (11-231)||(3326461-3326681)
chr8 (12-231)||(7166145-7166364)
chr8 (56-230)||(3264007-3264181)
chr8 (12-213)||(3287951-3288152)
chr8 (56-185)||(13786062-13786191)
chr8 (63-214)||(3268721-3268872)
chr8 (42-231)||(3408798-3408987)
chr8 (57-205)||(31174276-31174424)
[»] chr3 (2 HSPs)
chr3 (49-230)||(32412442-32412623)
chr3 (42-116)||(6907443-6907517)
[»] chr2 (1 HSPs)
chr2 (143-231)||(14768396-14768484)
[»] scaffold0468 (1 HSPs)
scaffold0468 (66-114)||(7851-7899)
[»] chr7 (2 HSPs)
chr7 (37-109)||(18929209-18929281)
chr7 (37-109)||(34727445-34727517)
[»] chr4 (1 HSPs)
chr4 (66-109)||(6834397-6834440)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 3326681 - 3326461
Alignment:
Q  11 cagagatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgct 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3326681 cagagatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggagtcccttgagcttttcagttggcatgct 3326582  T
Q  111 tttagacaacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttctt 210  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |    
T  3326581 tttagacaacctagtccgatacaagactactgtaaactctccaaaaaagtagttgcttattgtggaggattaccagttgctcttgaagtccttggttcat 3326482  T
Q  211 acttatatgagaggacaaaac 231  Q
    |||||||||||||||||||||    
T  3326481 acttatatgagaggacaaaac 3326461  T

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Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 7166364 - 7166145
Alignment:
Q  12 agagatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgctt 111  Q
    |||||||  ||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||  |||||||||||||||||||||||||||    
T  7166364 agagatgctcgcctgctcaatttagttaaggttgactatgtctgtacaatgaaggaaatggaagaaaaagacccccttgagcttttcagttggcatgctt 7166265  T
Q  112 ttagacaacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttctta 211  Q
    || ||||||||||||| ||| || ||| | || ||||||| |  |  |||||||| ||| ||||||||||||||   |||||||||||| | ||||||||    
T  7166264 ttcgacaacctagtccgataaaaaacttcagtgaactctcaaggaccgtagttgcctattgtggaggattaccactggctcttgaagtcatcggttctta 7166165  T
Q  212 cttatatgagaggacaaaac 231  Q
    |||||| | |||||||||||    
T  7166164 cttatacgggaggacaaaac 7166145  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 230
Target Start/End: Complemental strand, 3264181 - 3264007
Alignment:
Q  56 tacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaa 155  Q
    |||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||| ||||| ||| ||| |||||| | || ||||||| | |    
T  3264181 tacaatgaaggaaatgaacgaaagggagtcccttgagcttttcagttggcatgctttcagacgacctattccaataaaagacttcagtgaactctcaaga 3264082  T
Q  156 aaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaa 230  Q
    || |||||||||||| |  |||||||||||   ||||| |||||||| |||||||| || |||||||||||||||    
T  3264081 aacgtagttgcttattgcagaggattaccactggctctggaagtcctaggttcttagttgtatgagaggacaaaa 3264007  T

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Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 3288152 - 3287951
Alignment:
Q  12 agagatgtacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgctt 111  Q
    |||||||||| | | ||| ||||| |||||||||||||||| |||| ||||||||||||||| ||||| || ||||||||||||||||| ||||||| ||    
T  3288152 agagatgtacacctacttgatttatttaaggttgactatgtgtgtaaaatgaaggaaatggatgaaaatgagtcccttgagcttttcagctggcatgttt 3288053  T
Q  112 ttagacaacctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttctta 211  Q
    |||||||||||| ||| | | |||||| | || || |||| || |  |||||| ||||| ||||||||||||||   ||||| |||||| ||||||||||    
T  3288052 ttagacaacctaatccaagagaagacttcagtgaattctcaaagagggtagtttcttattgtggaggattaccactagctctagaagtcattggttctta 3287953  T
Q  212 ct 213  Q
    ||    
T  3287952 ct 3287951  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 13786062 - 13786191
Alignment:
Q  56 tacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaa 155  Q
    ||||||||||||||||| ||||    | || |||||||||||  |||||||||||||||||||||||||||| ||| |||||| | || ||||||| |      
T  13786062 tacaatgaaggaaatggtcgaaggtaagtctcttgagcttttttgttggcatgcttttagacaacctagtccaatagaagacttcagtgaactctcaagg 13786161  T
Q  156 aaagtagttgcttatcgtggaggattacca 185  Q
    |  |||||||||||| ||||||||||||||    
T  13786162 agcgtagttgcttattgtggaggattacca 13786191  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 3268872 - 3268721
Alignment:
Q  63 aaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaaaagtag 162  Q
    ||||||||||| |||||  | ||||||||||||||| ||||||||||||||||| |||| ||||| | |  ||||| | || ||||||| | || | |||    
T  3268872 aaggaaatggatgaaaacaagtcccttgagcttttctgttggcatgcttttagagaaccaagtccgaaaggagacttcagtgaactctcaagaagaatag 3268773  T
Q  163 ttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttactt 214  Q
    ||| |||  || |||||||||||   |||||||||||| |||| ||||||||    
T  3268772 ttgtttactgtagaggattaccactggctcttgaagtcattggatcttactt 3268721  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 231
Target Start/End: Complemental strand, 3408987 - 3408798
Alignment:
Q  42 gttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactact 141  Q
    ||||||| ||| | || |||| |||||||| |  |||| || |||||||| || |||  |||||||||||||||| || ||||||| | |  || ||       
T  3408987 gttgactctgtctataaaatggaggaaatgcagaaaaacgagtcccttgaactattctcttggcatgcttttagaaaagctagtcctagaggaggcttta 3408888  T
Q  142 gtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaac 231  Q
    || ||||||| | ||| || | ||||||| ||||||| ||||||   ||||||||||||||||| || ||||||| ||||||||||||||    
T  3408887 gtgaactctcaagaaatgtggctgcttattgtggagggttaccactggctcttgaagtccttggatcctacttatttgagaggacaaaac 3408798  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 31174276 - 31174424
Alignment:
Q  57 acaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaa 156  Q
    ||||||| |||||||||| || |  | |||||||| |||||| ||||||||||||||  |||||| | ||| | | |||  |  ||| ||||| | ||||    
T  31174276 acaatgacggaaatggacaaataccagtcccttgaacttttctgttggcatgcttttcaacaaccaaatcctagagaaggtttttgtgaactcactaaaa 31174375  T
Q  157 aagtagttgcttatcgtggaggattaccagctgctcttgaagtccttgg 205  Q
    |||| ||||||||| | ||||||||||||   |||||||||||||||||    
T  31174376 aagtggttgcttattgcggaggattaccattggctcttgaagtccttgg 31174424  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 32412623 - 32412442
Alignment:
Q  49 atgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaact 148  Q
    |||| |||||||||||||| ||||| ||| | || |||||||| |||||||||||||||||||||||| |||| ||||| | | || |||    | ||||    
T  32412623 atgtttgtacaatgaaggagatggatgaagatgagtcccttgaacttttcagttggcatgcttttagagaaccaagtccaacaaaatactttactgaact 32412524  T
Q  149 ctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaa 230  Q
    ||| | ||| || ||||||||  |||||||||| |||  |||||||||| ||||||| |||||||||||||  |||||||||    
T  32412523 ctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaa 32412442  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 6907517 - 6907443
Alignment:
Q  42 gttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttaga 116  Q
    ||||||| ||| ||||||  ||| |||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  6907517 gttgactgtgtctgtacagcgaaagaaatggatgaaaatgagtcccttgagcttttcagttggcatgcttttaga 6907443  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 14768484 - 14768396
Alignment:
Q  143 tcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaac 231  Q
    ||||||||| ||||| |||||||||||| |||||||||| |||   |||||||||||| |||| ||||||||||||| |||||||||||    
T  14768484 tcaactctcaaaaaaggtagttgcttattgtggaggattgccattggctcttgaagtcattggatcttacttatatgggaggacaaaac 14768396  T

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Target: scaffold0468 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 7899 - 7851
Alignment:
Q  66 gaaatggacgaaaaggaatcccttgagcttttcagttggcatgctttta 114  Q
    |||||||||||| | || |||||||||||||||||||||||||||||||    
T  7899 gaaatggacgaagatgagtcccttgagcttttcagttggcatgctttta 7851  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 18929209 - 18929281
Alignment:
Q  37 ttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgc 109  Q
    |||| ||| ||||||| | || |||||| ||||||||||| || ||||| ||||||||||| |||||||||||    
T  18929209 ttaaagttcactatgtgtatagaatgaaagaaatggacgacaatgaatctcttgagctttttagttggcatgc 18929281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 34727517 - 34727445
Alignment:
Q  37 ttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgc 109  Q
    |||| ||||||||||| | || |||||| |||||||| |  || ||||| ||||||||||| |||||||||||    
T  34727517 ttaaagttgactatgtgtatagaatgaaagaaatggatggcaatgaatctcttgagctttttagttggcatgc 34727445  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 6834397 - 6834440
Alignment:
Q  66 gaaatggacgaaaaggaatcccttgagcttttcagttggcatgc 109  Q
    |||||||||||||  ||||| |||||||||||||||||||||||    
T  6834397 gaaatggacgaaagtgaatctcttgagcttttcagttggcatgc 6834440  T

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