View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_35 (Length: 247)
Name: NF11700_low_35
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 6877186 - 6876959
Alignment:
| Q |
12 |
ggtaatcaatacaccgattatgctaaataatccattatcattttttaaacaacattaaacattagttcattaattaaaatacattaagcatctatgaatg |
111 |
Q |
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| T |
6877186 |
ggtaatcaatacaccgattatactaaataatccaatatcattttttaaacaacatta-------gttcattaattaaaatacattaagcatctatgaatg |
6877094 |
T |
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| Q |
112 |
ataacttaattgttctcattaccgtcaaatgggtggatatcatataatatgttaaagaaaatgttaacagtatattcgaccatactttttaaagatcata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
6877093 |
ataacttaattgttctcattaccgtcaaatgggtggatatcatataatatgttaaagaaaatgttaacagtatattcgacgatactttttaaagaccata |
6876994 |
T |
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| Q |
212 |
actaataaatttttataaaagaattgtgtattcaat |
247 |
Q |
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|||||||| |||||| |||| |||||| |||||||| |
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| T |
6876993 |
actaataagttttta-aaaataattgtatattcaat |
6876959 |
T |
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