View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_39 (Length: 243)
Name: NF11700_low_39
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 34092599 - 34092365
Alignment:
| Q |
1 |
tataattaatttaaaaaatcttttattgtaggcttgttaaagannnnnnnaaaaccaatattgatgttttaattaaatttgaaagatattttnnnnnnnc |
100 |
Q |
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| T |
34092599 |
tataattaatttaaaaaatcttttattgtaggcttgttaaagatttttttaaaaccaattttgatgttttaattaaatttgaaagatattttaaaaaaac |
34092500 |
T |
|
| Q |
101 |
gatgttatgttaaagatgaaataaatattttgattaaccttgtattaaataatttttggtagaaaaaatagaaaacttagtctgtatatgatgtgatttg |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34092499 |
gatgttatgttaaagattaaataaatattttgattaaccttgtattaaataatttttggtagaaaaaatagaaaacttagtctgtatatgatgtgatttg |
34092400 |
T |
|
| Q |
201 |
ttttcaaaggagattgtatatgatgtgatgtccat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
34092399 |
ttttcaaaggagattgtatatgatgtgatgtccat |
34092365 |
T |
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