View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_44 (Length: 215)
Name: NF11700_low_44
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_44 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 21859177 - 21859361
Alignment:
| Q |
18 |
tgagctgaagattaaagatagtaaggtattttttggcatctaatcatgnnnnnnnncttcaaaaacttcatctgtataagtttttcggatcgtatgttgg |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21859177 |
tgagctgaagattaaagatagtaagatattttttggcatctaatcatgttttttttcttcaaaaacttcatctgtattagtttttcggatcgtatgttgg |
21859276 |
T |
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| Q |
118 |
atctagattccatc--nnnnnnnnnnnnnnnnctgaatccattttgattagcatgtctcatgttttgtttaaagacttcctattt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
21859277 |
atctagattccatctttttttttttcttttttctgaatccattttgattagcatatctcatgttttgtttaaagacttcatattt |
21859361 |
T |
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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 35243102 - 35242919
Alignment:
| Q |
18 |
tgagctgaagattaaagat-agtaaggtattttttggcatctaatcatgnnnnnnnncttcaaaaacttcatctgtataagtttttcggatcgtatgttg |
116 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| | |
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| T |
35243102 |
tgagctgaagattaaagatcagtaagatattttttggcatctaatcatgtttttttttttcaaaaacttcatctgtattagtttttcggattgtatgcag |
35243003 |
T |
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| Q |
117 |
gatctagattccatcnnnnnnnnnnnnnnnnctgaatccattttgattagcatgtctcatgttttgtttaaagacttcctattt |
200 |
Q |
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| T |
35243002 |
gatctagattccatcttttttttttttttttctaaatccattttggttagcatatctcatgttttgtttaaagacttcatattt |
35242919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 12771003 - 12770905
Alignment:
| Q |
22 |
ctgaagattaaagatag-taaggtattttttggcatctaatcatgnnnnnnnncttcaaaaacttcatctgtataagtttttcggatcgtatgttggat |
119 |
Q |
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| T |
12771003 |
ctgaagattaaagatcggtaaggtattttttggcatctaatcatgttttttttcttcaaaaacttcatctgtattagtttttcggatcgtatgttggat |
12770905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 58939 - 58835
Alignment:
| Q |
18 |
tgagctgaagattaaagat-agtaaggtattttttggcatctaatcatgnnnnnnnncttcaaaaacttcatctgtataagtttttcggatcgtatgttg |
116 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| | ||| |||||||||||| | ||| || |
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| T |
58939 |
tgagctgaagattaaagatcagtaaggtattttttggcatctaatcatgttttttttcttcaaagacttcatatttattagtttttcggattgcatgctg |
58840 |
T |
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| Q |
117 |
gatct |
121 |
Q |
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||||| |
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| T |
58839 |
gatct |
58835 |
T |
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