View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_5 (Length: 841)
Name: NF11700_low_5
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 710; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 86 - 831
Target Start/End: Original strand, 40222402 - 40223146
Alignment:
| Q |
86 |
cagaattacagagcatatctctagtttagaatcatcatttatgcaatatttgagatcataagaatgagattgtacttatattaaggtaaagtaaaactac |
185 |
Q |
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| T |
40222402 |
cagaattacagagcatatctctagtttagaatcatcatttatgcaatatttgagatcataagaatgagattgtacttatattaaggtaaagtaaaactac |
40222501 |
T |
|
| Q |
186 |
ttgataaatcaaaatttcttcaataaattcttcttactttttgtgtcctcctttatctgtccaaatattggaacaccaagctgaatgagctctctcttgt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222502 |
ttgataaatcaaaatttcttcaataaattcttcttactttttgtgtcctcctttatctgtccaaatattggaacaccaagctgaatgagctctctcttgt |
40222601 |
T |
|
| Q |
286 |
tacctttcatctgtttgttgaataatataaaagtttcacctacaaaggatgcaagagaagtagcagtttaagaaatattcgattcattatataacggcac |
385 |
Q |
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| T |
40222602 |
tacctttcatctgtttgttgaataatataaaagtttcacctacaaaggatgcaagagaagtagcagtttaagaaatattcgattcattatataacggcac |
40222701 |
T |
|
| Q |
386 |
ggataatttggagctgccatagatggtcttaatatatttttctaaaaatgagaatatccagatacacacaaagtacaacagtggtttaccagacagttcc |
485 |
Q |
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| T |
40222702 |
ggataatttggagctgccatagatggtcttggtatatttttctaaaaatgagaatatccagc-acacacaaagtacaacagtggtttaccagacagttcc |
40222800 |
T |
|
| Q |
486 |
ccattctgaccagcagtatggatctcatccacaaaatctgacagcttgcacaattctgaatcagtgaaaacgtcttcatataacttcaatcctttcacaa |
585 |
Q |
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| T |
40222801 |
ccattctgaccagcagtatggatctcatccacaaaatctgacagcttgcacaattctgaatcagtgaaaacgtcttcatataacttcaatcctttcacaa |
40222900 |
T |
|
| Q |
586 |
cattcacctgcaaattgcaatcagctgttattcagaagtactgcagtaataataacctgaatcttaatgcataaattaattgggacgaaataaatgtaat |
685 |
Q |
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| T |
40222901 |
cattcacctgcaaattgcaatcagctgttattcagaagtactgcagtaataataacctgaatcttaatgcataaattaattaggacgaaataaatgtaat |
40223000 |
T |
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| Q |
686 |
gtaatgtattttaaatttgtgacataaagaaagaacttgccatatgccccttcactgactcttttgctgtaaaaccttttgtcaacttaaactgtgaagc |
785 |
Q |
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| T |
40223001 |
gtaatgtattttaaatttgtgacataaagaaagaacttgccatatgccccttcactgactcttttgctgtaaaaccttttgtcaacttaaactgtgtagc |
40223100 |
T |
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| Q |
786 |
acgtccttcacactcttcatgattggaacatatattgatgtccatc |
831 |
Q |
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| T |
40223101 |
acgtccttcacactcttcatgattggaacatatattaatgttcatc |
40223146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 40222334 - 40222376
Alignment:
| Q |
18 |
ataacacgctgcagaagtgccggaattggctctatattacctg |
60 |
Q |
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| T |
40222334 |
ataacacgctgcagaagtgccggaattggctctatattacctg |
40222376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 480 - 606
Target Start/End: Original strand, 37509597 - 37509723
Alignment:
| Q |
480 |
agttccccattctgaccagcagtatggatctcatccacaaaatctgacagcttgcacaattctgaatcagtgaaaacgtcttcatataacttcaatcctt |
579 |
Q |
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|||||||||||||| ||||||| ||||||||| | ||||||||| | ||||||||| | || ||| |||| |||||||| ||||| ||| ||||||||| |
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| T |
37509597 |
agttccccattctggccagcagcatggatctctttcacaaaatcagtcagcttgcagagttgtgattcagaaaaaacgtcctcatacaacctcaatcctt |
37509696 |
T |
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| Q |
580 |
tcacaacattcacctgcaaattgcaat |
606 |
Q |
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| T |
37509697 |
tcacagcattcacctgctaattgcaat |
37509723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 37509238 - 37509351
Alignment:
| Q |
213 |
ttcttcttactttttgtgtcctcctttatctgtccaaatattggaacaccaagctgaatgagctctctcttgttacctttcatctgtttgttgaataata |
312 |
Q |
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|||||||||||||| || | || |||||||| ||||||| |||||||| | |||||| | |||||||||||| || |||| ||||||||| ||| || |
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| T |
37509238 |
ttcttcttacttttggtattgtcttttatctgcccaaataggggaacacctaactgaatcatctctctcttgttccccttcacctgtttgttatatagta |
37509337 |
T |
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| Q |
313 |
taaaagtttcacct |
326 |
Q |
| |
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|||||||||||||| |
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| T |
37509338 |
taaaagtttcacct |
37509351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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