View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_6 (Length: 591)
Name: NF11700_low_6
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 9 - 577
Target Start/End: Complemental strand, 23073097 - 23072529
Alignment:
| Q |
9 |
agcagagattgatggaattggaatgagtttagatcttaatgaatatgatcttgagccagcaagaatgacactacatcgttttggtaacacttctgctggt |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| | | |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| || |
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| T |
23073097 |
agcagtgattgatggaattggaatgagtttagatttaagtgaatatgatcttgagcctgcaaggatgacactacatcgtttcggtaacacttctgctagt |
23072998 |
T |
|
| Q |
109 |
agcttgtggtatgtgttagggtacatggaagcaaaaaagaggctnnnnnnnggtgatagagtttttatgataagctttggtgctggattcaaatgcaata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
23072997 |
agcttgtggtatgtgttagggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtgctggatttaaatgcaata |
23072898 |
T |
|
| Q |
209 |
gttgcttatgggaagtgatgaaagatgttgaagatgcaaatgtatgggaagattgtattgataattatccaccaaagtctttggtcaatcctttcatgga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23072897 |
gttgcttatgggaagtgatgaaagatgttggagatgcaaatgtttgggaagattgtattgataattatccaccaaagtctttggtcaatcctttcatgga |
23072798 |
T |
|
| Q |
309 |
gaagtatagttgggtcaatgaagttgaggatcctaacaactatgatcttcctgaatttctcaagtgaaggtaattaatttcattcaatcattatggaatg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
23072797 |
gaagtatagttgggtcaatgaagttgaggatcctaacaactatgatcttcctgaatttctcaagtgaaggtaattaatttcattcaatcattgtggaatg |
23072698 |
T |
|
| Q |
409 |
aaataccaaaattaagttaaggttattgtgcattattttctttattctgtattaatatacactcgttgttattatgattgaaaccctgatcaagggaatg |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23072697 |
aaataccaaaattaagttaaggttattgtgcattattttctttattctgtattaatatacactcgttgttattatgattgaaaccctgatcaagggaata |
23072598 |
T |
|
| Q |
509 |
aattctctcaaattcnnnnnnngtcatgtgttatcaatatcactattgatattttgactcttactcttt |
577 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
23072597 |
gattctctcaaattctttttttgtcatgtgttatcaatatcactgttgatattttgactcttactcttt |
23072529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 9 - 375
Target Start/End: Original strand, 23111240 - 23111606
Alignment:
| Q |
9 |
agcagagattgatggaattggaatgagtttagatcttaatgaatatgatcttgagccagcaagaatgacactacatcgttttggtaacacttctgctggt |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| | | |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| || |
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|
| T |
23111240 |
agcagtgattgatggaattggaatgagtttagatttaagtgaatatgatcttgagcctgcaaggatgacactacatcgtttcggtaacacttctgctagt |
23111339 |
T |
|
| Q |
109 |
agcttgtggtatgtgttagggtacatggaagcaaaaaagaggctnnnnnnnggtgatagagtttttatgataagctttggtgctggattcaaatgcaata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
23111340 |
agcttgtggtatgtgttagggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtgctggatttaaatgcaata |
23111439 |
T |
|
| Q |
209 |
gttgcttatgggaagtgatgaaagatgttgaagatgcaaatgtatgggaagattgtattgataattatccaccaaagtctttggtcaatcctttcatgga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
23111440 |
gttgcttatgggaagtgatgaaagatgttggagatgcaaatgtttgggaagattgtattgataattatccacctaagtctttggtcaatcctttcatgga |
23111539 |
T |
|
| Q |
309 |
gaagtatagttgggtcaatgaagttgaggatcctaacaactatgatcttcctgaatttctcaagtga |
375 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| |||||| |
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|
| T |
23111540 |
gaagtatggttgggtcaatgaagttgaggatccaaacaattatgaacttcctgattttcttaagtga |
23111606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 394
Target Start/End: Complemental strand, 23077702 - 23077315
Alignment:
| Q |
9 |
agcagagattgatggaattggaatgagtttagatcttaatgaatatgatcttgagccagcaagaatgacactacatcgttttggtaacacttctgctggt |
108 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||| | |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23077702 |
agcagtgattgatggagttggaaagagtttagatctaagtgaatatgatcttgagcctgcaaggatgacactacatcgttttggtaacacttctgctggt |
23077603 |
T |
|
| Q |
109 |
agcttgtggtatgtgttagggtacatggaagcaaaaaagaggctnnnnnnnggtgatagagtttttatgataagctttggtgctggattcaaatgcaata |
208 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
23077602 |
agtttgtggtatgtgttagggtacatggaagccaaaaagaggctaaaaaaaggtgatagagtttttatgataagctttggtgctggatttaaatgcaata |
23077503 |
T |
|
| Q |
209 |
gttgcttatgggaagtgatgaaagatgttgaagatgcaaatgtatgggaagattgtattgataattatccaccaaagtctttggtcaatcctttcatgga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
23077502 |
gttgcttatgggaagtgatgaaagatgttggagatgcaaatgtatgggaagattgtattgatgattatccaccagagtctttgatcaatcctttcatgga |
23077403 |
T |
|
| Q |
309 |
gaagtatagttgggtcaatgaagttgaggatcctaacaactatgatcttcctgaatttctcaagtgaaggtaat--taatttcattca |
394 |
Q |
| |
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||||||| ||||| ||||||||||||||||| | ||||| ||| |||||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
23077402 |
gaagtatggttggctcaatgaagttgaggatgaaaccaactttgaacttcctgaatttcttaagtgaaggtaattataatttcattca |
23077315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 41080194 - 41079965
Alignment:
| Q |
9 |
agcagagattgatggaattggaatgagtttagatcttaatgaatatgatcttgagccagcaagaatgacactacatcgttttggtaacacttctgctggt |
108 |
Q |
| |
|
||||| ||| ||||||||||| |||||||||||||| ||||| ||||| || || |||||||||||| || ||||| | ||||||||||| || || || |
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|
| T |
41080194 |
agcagtgatagatggaattgggatgagtttagatctgaatgattatgacctagaaccagcaagaatgtcattacatagatttggtaacacatcagcaagt |
41080095 |
T |
|
| Q |
109 |
agcttgtggtatgtgttagggtacatggaagcaaaaaagaggctnnnnnnnggtgatagagtttttatgataagctttggtgctggattcaaatgcaata |
208 |
Q |
| |
|
|| |||||||||||||| ||||| |||||||| || |||||| | ||||| ||||| || |||||||| || |||||||| || |||||||| | |
|
|
| T |
41080094 |
agtttgtggtatgtgttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaaca |
41079995 |
T |
|
| Q |
209 |
gttgcttatgggaagtgatgaaagatgttg |
238 |
Q |
| |
|
|||| | |||||||| |||| |||||||| |
|
|
| T |
41079994 |
gttgttattgggaagtaatgagagatgttg |
41079965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 52246127 - 52246233
Alignment:
| Q |
46 |
aatgaatatgatcttgagccagcaagaatgacactacatcgttttggtaacacttctgctggtagcttgtggtatgtgttagggtacatggaagcaaaaa |
145 |
Q |
| |
|
||||||||||||||||||||||| || ||| |||| ||||||| ||||| |||||||||||| | || |||||||| ||||| || ||||||||||||| |
|
|
| T |
52246127 |
aatgaatatgatcttgagccagctaggatggcacttcatcgttggggtaatacttctgctggtggattatggtatgttttaggttatatggaagcaaaaa |
52246226 |
T |
|
| Q |
146 |
agaggct |
152 |
Q |
| |
|
||||||| |
|
|
| T |
52246227 |
agaggct |
52246233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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