View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11700_low_7 (Length: 575)

Name: NF11700_low_7
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11700_low_7
NF11700_low_7
[»] chr7 (16 HSPs)
chr7 (329-559)||(2335283-2335501)
chr7 (6-151)||(2335724-2335869)
chr7 (201-347)||(2335577-2335723)
chr7 (6-156)||(2319322-2319473)
chr7 (417-559)||(2322124-2322262)
chr7 (6-175)||(2326134-2326305)
chr7 (406-559)||(2326414-2326563)
chr7 (390-478)||(1540543-1540631)
chr7 (397-490)||(1556595-1556688)
chr7 (389-490)||(1563843-1563944)
chr7 (388-491)||(1605256-1605359)
chr7 (422-490)||(1597283-1597351)
chr7 (419-490)||(1089530-1089601)
chr7 (417-551)||(3954367-3954497)
chr7 (507-559)||(1549881-1549933)
chr7 (388-491)||(1106869-1106972)
[»] scaffold0491 (1 HSPs)
scaffold0491 (397-485)||(5202-5290)
[»] chr8 (3 HSPs)
chr8 (385-485)||(18738419-18738518)
chr8 (385-485)||(18743383-18743482)
chr8 (397-485)||(18748361-18748449)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 9e-87; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 329 - 559
Target Start/End: Complemental strand, 2335501 - 2335283
Alignment:
Q  329 gaaaaattcctacgaaaaaacctattagaatggataaactaaatattaattcaagcttctgaagtgtttcttgcaagggttcccaacgtgaaataatgct 428  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||    
T  2335501 gaaaaattcctaagaaaaaacctattagaatggataaactaaatattaattcaagcttctgaagtgtttcttgcaagggt---------gaaataatgct 2335411  T
Q  429 tttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgtgtgtacgttcaatggaaaaactctc-cgacgcacattt 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||  ||||| |||||    
T  2335410 tttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatg----gtgtacgttcaatggaaaaactctcatgacgcgcattt 2335315  T
Q  528 cattgttggtcaagagcaaggattgagattta 559  Q
    ||||||||||||||||||||||||||||||||    
T  2335314 cattgttggtcaagagcaaggattgagattta 2335283  T

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Target: chr7; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 2335869 - 2335724
Alignment:
Q  6 atattcagtacgatttaatgattagactcattgattgtgctacacatgtttgacgaaattagatataaaagtcttgtgtgaacatggaaaaatttaatag 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  2335869 atattcagtacgatttaatgattagactcattgattgtgctacacatgtttgacgaaattagatataaaagtctagtgtgaagatggaaaaatttaatag 2335770  T
Q  106 cattatttatgaaggatacatgtttttctcttttgcatcattcttt 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2335769 cattatttatgaaggatacatgtttttctcttttgcatcattcttt 2335724  T

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Target: chr7; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 201 - 347
Target Start/End: Complemental strand, 2335723 - 2335577
Alignment:
Q  201 tggtacatgctggaccaaaagaagtaagattctttccacacgctatggccaaacttacattagaaatcttgatatttcctacgatttccgagaaaaacag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2335723 tggtacatgctggaccaaaagaagtaagattctttccacacgctattgccaaacttacattagaaatcttgatatttcctacgatttccgagaaaaacag 2335624  T
Q  301 ttatctctaaaatgcaatgattttcaaagaaaaattcctacgaaaaa 347  Q
     |||||||||||| |||||||||||||||| ||||||||||||||||    
T  2335623 gtatctctaaaatacaatgattttcaaagacaaattcctacgaaaaa 2335577  T

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Target: chr7; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 6 - 156
Target Start/End: Complemental strand, 2319473 - 2319322
Alignment:
Q  6 atattcagtacgatttaatgattagactcattgattgtgctacacatgtttgacgaaattagatataaaagtcttgtgtgaacatggaaaa-atttaata 104  Q
    |||||| |||||||| ||||||||||||||||||| || |||||||||| | | || |||||||||||||||||||||||||||||||||| ||||||||    
T  2319473 atattcggtacgattgaatgattagactcattgatagtactacacatgtatcatgacattagatataaaagtcttgtgtgaacatggaaaatatttaata 2319374  T
Q  105 gcattatttatgaaggatacatgtttttctcttttgcatcattctttgaagg 156  Q
    |||| |||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  2319373 gcatcatttatgaaggagacaagtttttctcctttgcatcattctttgaagg 2319322  T

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Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 417 - 559
Target Start/End: Complemental strand, 2322262 - 2322124
Alignment:
Q  417 tgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgtgtgtacgttcaatggaaaaactctcc 516  Q
    |||||||||||||||| ||||| ||| || ||||||| ||  ||||| |||||||||||||| |||||||||||    | ||||| ||||||||||||      
T  2322262 tgaaataatgcttttaattcttgactcatcagttgctgcacagaaatttcactcaaaggaatgcttaatggtgt----aagttcagtggaaaaactctgt 2322167  T
Q  517 gacgcacatttcattgttggtcaagagcaaggattgagattta 559  Q
    |||||||||||||||||||||| |||| |||||||||||||||    
T  2322166 gacgcacatttcattgttggtcgagagaaaggattgagattta 2322124  T

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Target: chr7; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 2326305 - 2326134
Alignment:
Q  6 atattcagtacgatttaatgattagactcattgattgtgctacacatgtttgacgaaatt-agatataaaagtcttgtgtgaacatggaaaaa--tttaa 102  Q
    |||||| ||||||| ||||||||||||| |||||| ||||||||||||| | |||| ||| ||| ||||||||||| ||||||||| ||||||  | |||    
T  2326305 atattctgtacgatataatgattagactaattgatggtgctacacatgtgtcacgacatttagaaataaaagtcttatgtgaacatagaaaaaaatgtaa 2326206  T
Q  103 tagcattatttatgaaggatacatgtttttctcttttgcatcattctttgaaggtagacatgacaacaatttt 175  Q
     ||||| ||||| ||||||||||||| |||||| | |||||||||||||||| |  || ||||||||||||||    
T  2326205 aagcatcatttacgaaggatacatgtatttctcctatgcatcattctttgaaag-ggaaatgacaacaatttt 2326134  T

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Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 406 - 559
Target Start/End: Complemental strand, 2326563 - 2326414
Alignment:
Q  406 ggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgtgtgtacgttcaatgg 505  Q
    ||||||| || |||||||||  ||||||||||| ||| || ||||||| || |||||| |||||| || |||||||| |||||||    | |||||||||    
T  2326563 ggttcccgacatgaaataatatttttagttcttgactcatgagttgctgcactgaaatttcactcgaaagaatacttgatggtgt----aggttcaatgg 2326468  T
Q  506 aaaaactctccgacgcacatttcattgttggtcaagagcaaggattgagattta 559  Q
     ||||||||  ||| |||||||||||||||||| |||| |||||||||||||||    
T  2326467 caaaactctgtgacacacatttcattgttggtcgagagaaaggattgagattta 2326414  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 478
Target Start/End: Original strand, 1540543 - 1540631
Alignment:
Q  390 aagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaat 478  Q
    |||| |||||| |||| ||||||||  | |||||||||||| ||||||||||| |||||||||| || |||||| ||||||||||||||    
T  1540543 aagtatttctttcaagagttcccaatataaaataatgctttgagttcttcactcattagttgctccactgaaatttcactcaaaggaat 1540631  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 490
Target Start/End: Original strand, 1556595 - 1556688
Alignment:
Q  397 tcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt 490  Q
    |||| ||||||||| |||  | ||||||||| || ||||||||||| |||||||| | || |||||| |||||||||||||| |||||||||||    
T  1556595 tctttcaagggttctcaatataaaataatgcattgagttcttcactcattagttgttgcactgaaatttcactcaaaggaatgcttaatggtgt 1556688  T

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Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 490
Target Start/End: Original strand, 1563843 - 1563944
Alignment:
Q  389 gaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggt 488  Q
    ||||| |||||| |||||| ||||||  | |||||||||||  ||||||||||| |||||||||| || |||||| |||||||||||||  ||||| |||    
T  1563843 gaagtttttctttcaaggggtcccaatataaaataatgcttcgagttcttcactcattagttgctgcactgaaatttcactcaaaggaaggcttaacggt 1563942  T
Q  489 gt 490  Q
    ||    
T  1563943 gt 1563944  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 491
Target Start/End: Complemental strand, 1605359 - 1605256
Alignment:
Q  388 tgaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatgg 487  Q
    |||||| |||||| || ||||||||||  | ||||||| |||| ||||||| ||| || ||||| | || |||||| |||||||||||||| ||||||||    
T  1605359 tgaagtttttctttcaggggttcccaatataaaataatcctttcagttcttgactcatgagttgttgcactgaaatttcactcaaaggaatgcttaatgg 1605260  T
Q  488 tgtg 491  Q
    ||||    
T  1605259 tgtg 1605256  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 490
Target Start/End: Complemental strand, 1597351 - 1597283
Alignment:
Q  422 taatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt 490  Q
    ||||||| | ||||||||||| |||||||||| ||  ||||| |||||||||||||| |||||||||||    
T  1597351 taatgctctgagttcttcactcattagttgctgcacggaaatttcactcaaaggaatgcttaatggtgt 1597283  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 419 - 490
Target Start/End: Complemental strand, 1089601 - 1089530
Alignment:
Q  419 aaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgt 490  Q
    |||||||||||| ||||||| ||| |  ||||||| ||||||||| |||||||||||| | |||||||||||    
T  1089601 aaataatgctttgagttcttgactcaagagttgctgcattgaaatttcactcaaaggagttcttaatggtgt 1089530  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 551
Target Start/End: Original strand, 3954367 - 3954497
Alignment:
Q  417 tgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatggtgtgtgtacgttcaatggaaaaactctcc 516  Q
    |||||||||||||| ||||||| | | |  ||||||| || |||||| || ||||||||||| |||||||    |||||   |||||||||||||| |      
T  3954367 tgaaataatgctttgagttcttgattcacgagttgcttcactgaaatttctctcaaaggaatgcttaatg----gtgtaacctcaatggaaaaactttgt 3954462  T
Q  517 gacgcacatttcattgttggtcaagagcaaggatt 551  Q
    ||| ||| |||||||||||||| |||| |||||||    
T  3954463 gacacacttttcattgttggtctagaggaaggatt 3954497  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 1549881 - 1549933
Alignment:
Q  507 aaaactctccgacgcacatttcattgttggtcaagagcaaggattgagattta 559  Q
    |||||| || ||| |||||||||||||||||| ||||| ||||||||||||||    
T  1549881 aaaactttctgacacacatttcattgttggtcgagagcgaggattgagattta 1549933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 491
Target Start/End: Complemental strand, 1106972 - 1106869
Alignment:
Q  388 tgaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaatgg 487  Q
    |||||| |||||| || ||||||||||  | ||||||| |||| ||||||| ||   | ||||| | || |||||| |||||||||||||| ||||||||    
T  1106972 tgaagtttttctttcaggggttcccaatataaaataatcctttcagttcttgacccgtgagttgttgcactgaaatttcactcaaaggaatgcttaatgg 1106873  T
Q  488 tgtg 491  Q
    ||||    
T  1106872 tgtg 1106869  T

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Target: scaffold0491 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 397 - 485
Target Start/End: Original strand, 5202 - 5290
Alignment:
Q  397 tcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaat 485  Q
    |||| ||||||||| |||  | ||| |||||||| ||||||||||| |||||||||| || |||||| ||||| |||||||||||||||    
T  5202 tctttcaagggttcgcaatataaaacaatgctttgagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaat 5290  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 385 - 485
Target Start/End: Original strand, 18738419 - 18738518
Alignment:
Q  385 ttctgaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaa 484  Q
    ||||||||| |||||| ||||||||| |||    ||| |||||||| ||||||||||| |||||||||| || |||||| ||||| ||||||||||||||    
T  18738419 ttctgaagt-tttctttcaagggttcgcaatacaaaacaatgctttaagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaa 18738517  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 385 - 485
Target Start/End: Original strand, 18743383 - 18743482
Alignment:
Q  385 ttctgaagtgtttcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaa 484  Q
    ||||||||| |||||| ||||||||| |||    ||| |||||||| ||||||||||| |||||||||| || |||||| ||||| ||||||||||||||    
T  18743383 ttctgaagt-tttctttcaagggttcgcaatacaaaacaatgctttaagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaa 18743481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 397 - 485
Target Start/End: Original strand, 18748361 - 18748449
Alignment:
Q  397 tcttgcaagggttcccaacgtgaaataatgcttttagttcttcactaattagttgctacattgaaatatcactcaaaggaatacttaat 485  Q
    |||| ||||||||| |||  | ||| |||||||| ||||||||||| |||||||||| || |||||| ||||| |||||||||||||||    
T  18748361 tctttcaagggttcgcaatataaaacaatgctttgagttcttcactcattagttgctgcactgaaatttcactgaaaggaatacttaat 18748449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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