View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_8 (Length: 556)
Name: NF11700_low_8
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Complemental strand, 16954378 - 16954004
Alignment:
| Q |
16 |
gacatcacagtaacaaaactagtagcaaatggtttatacaaagaagcgcttaacctatattcacacctccactcttcctcccccacccctaacaccttca |
115 |
Q |
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| T |
16954378 |
gacataacagtaacaaaactagtagcaaatggtttatacaaagaagcgcttaacctatattcacacctccactcttcctcccccacccctaacaccttca |
16954279 |
T |
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| Q |
116 |
ccttccccattctcctcaaagcatgctccaatctctcttccccttctcaaactcaaatcctccatgcccatctcttcaaaactggtttccactcccaccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16954278 |
ccttccccattctcctcaaagcatgctccaatctctcttccccttctcaaactcaaatcctccatgcccatctcttcaaaactggtttccactcccaccc |
16954179 |
T |
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| Q |
216 |
tcacacatccactgccctcattgcctcttatgctgccaaccctcgctctttccattacgcccttgaactgttcgatgaagtgcctcaaccaactatcact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16954178 |
tcacacatccactgccctcattgcctcttatgctgccaacactcgctctttccactacgcccttgaactgttcgatgaaatgcctcaaccaactatcact |
16954079 |
T |
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| Q |
316 |
gcctttaacgctgtactttctggattatcgcgaaacgggcctcacgggcaagctgtgtggcttttcctccaaatt |
390 |
Q |
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| T |
16954078 |
gcctttaacgctgtactttctggattatcgcgaaacgggcctcgcgggcaagctgtgtggcttttccgccaaatt |
16954004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 373 - 552
Target Start/End: Original strand, 16953680 - 16953859
Alignment:
| Q |
373 |
tggcttttcctccaaattcatcgtcatatccttaaaaacatcaaaaacaacacgatgaaacccgttttgcaacaaccctgacataaaagcattgtaagta |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16953680 |
tggcttttcctccaaattcatcgtcatatccttaaaaacatcaaaaacaacacgatgaaacccgttttgcaacaaccctgacataaaagcattgtaagta |
16953779 |
T |
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| Q |
473 |
accacatttttcacgcgtaaattttcaaaaaccttattcgaagaaaccaaaaccccacatttcgaataagcagtaacaag |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16953780 |
accacatttttcacgcgtaaattttcaaaaaccttattcgaagaaaccaaaaccccacatttcgaataagcagtaacaag |
16953859 |
T |
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