View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11700_low_9 (Length: 555)
Name: NF11700_low_9
Description: NF11700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11700_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 16 - 555
Target Start/End: Complemental strand, 16954378 - 16953839
Alignment:
| Q |
16 |
gacatcacagtaacaaaactagtagcaaatggtttatacaaagaagcgcttaacctatattcacacctccactcttcctcccccacccctaacaccttca |
115 |
Q |
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| T |
16954378 |
gacataacagtaacaaaactagtagcaaatggtttatacaaagaagcgcttaacctatattcacacctccactcttcctcccccacccctaacaccttca |
16954279 |
T |
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| Q |
116 |
ccttccccattctcctcaaagcatgctccaatctctcttccccttctcaaactcaaatcctccatgcccatctcttcaaaactggtttccactcccaccc |
215 |
Q |
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| T |
16954278 |
ccttccccattctcctcaaagcatgctccaatctctcttccccttctcaaactcaaatcctccatgcccatctcttcaaaactggtttccactcccaccc |
16954179 |
T |
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| Q |
216 |
tcacacatccactgccctcattgcctcttatgctgccaaccctcgctctttccattacgcccttgaactgttcgatgaagtgcctcaaccaactatcact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16954178 |
tcacacatccactgccctcattgcctcttatgctgccaacactcgctctttccactacgcccttgaactgttcgatgaaatgcctcaaccaactatcact |
16954079 |
T |
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| Q |
316 |
gcctttaacgctgtactttctggattatcgcgaaacgggcctcacgggcaagctgtgtggcttttccgccaaattgggttttggaatattagacccaatt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16954078 |
gcctttaacgctgtactttctggattatcgcgaaacgggcctcgcgggcaagctgtgtggcttttccgccaaattgggttttggaatattagacccaatt |
16953979 |
T |
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| Q |
416 |
ctgtcacggtggcgtctttactctctgcacgtgatgtaaaaaatcaaagtcatgtgcagcaggttcattgcttggcatgcaagttaggagttgaatatga |
515 |
Q |
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|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16953978 |
ctgtcacgatagtgtctttactctctgcacgtgatgtaaaaaatcaaagtcatgtgcagcaggttcattgcttggcatgcaagttaggagttgaatatga |
16953879 |
T |
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| Q |
516 |
tgtttacgtctcaacttcacttgttactgcttattcgaaa |
555 |
Q |
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| T |
16953878 |
tgtttacgtttcaacttcgcttgttactgcttattcgaaa |
16953839 |
T |
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