View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11701_high_1 (Length: 1155)

Name: NF11701_high_1
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11701_high_1
NF11701_high_1
[»] chr8 (6 HSPs)
chr8 (9-419)||(32025953-32026363)
chr8 (648-1135)||(32023640-32024110)
chr8 (457-654)||(32025719-32025916)
chr8 (862-1097)||(10332894-10333130)
chr8 (862-1097)||(9330330-9330567)
chr8 (660-717)||(12074518-12074575)
[»] chr7 (17 HSPs)
chr7 (24-207)||(21579465-21579648)
chr7 (862-1097)||(30758624-30758861)
chr7 (862-1097)||(25137073-25137310)
chr7 (843-1115)||(23409652-23409925)
chr7 (843-1115)||(9953881-9954155)
chr7 (302-477)||(21579763-21579938)
chr7 (862-1094)||(7747468-7747702)
chr7 (230-305)||(15584245-15584321)
chr7 (267-322)||(1905133-1905188)
chr7 (265-303)||(1841707-1841745)
chr7 (24-84)||(1872374-1872434)
chr7 (36-156)||(1881842-1881962)
chr7 (843-1001)||(23688553-23688713)
chr7 (773-840)||(19612645-19612712)
chr7 (34-88)||(1829230-1829284)
chr7 (265-306)||(1866079-1866120)
chr7 (271-312)||(17982599-17982640)
[»] chr1 (2 HSPs)
chr1 (862-1097)||(36215751-36215988)
chr1 (762-837)||(3334775-3334850)
[»] chr2 (3 HSPs)
chr2 (862-1095)||(11925589-11925824)
chr2 (843-1115)||(41363021-41363295)
chr2 (862-992)||(44679720-44679851)
[»] chr6 (4 HSPs)
chr6 (862-1097)||(28871717-28871954)
chr6 (864-1115)||(35023706-35023958)
chr6 (880-1097)||(33354035-33354253)
chr6 (864-1115)||(2879953-2880210)
[»] chr4 (13 HSPs)
chr4 (909-1097)||(3216105-3216293)
chr4 (862-1097)||(9352972-9353209)
chr4 (843-1115)||(16420213-16420486)
chr4 (862-1097)||(6673400-6673637)
chr4 (843-1119)||(53438422-53438700)
chr4 (843-1113)||(53436995-53437267)
chr4 (1000-1115)||(46671270-46671385)
chr4 (862-992)||(9341871-9342002)
chr4 (24-87)||(15465491-15465554)
chr4 (857-938)||(987643-987725)
chr4 (229-298)||(9195456-9195526)
chr4 (229-369)||(9244613-9244754)
chr4 (229-379)||(5719518-5719666)
[»] scaffold0210 (2 HSPs)
scaffold0210 (862-1097)||(23208-23445)
scaffold0210 (862-1097)||(24212-24449)
[»] scaffold0007 (1 HSPs)
scaffold0007 (843-1115)||(275620-275893)
[»] chr3 (3 HSPs)
chr3 (885-1101)||(27088563-27088779)
chr3 (880-1052)||(559760-559933)
chr3 (864-1115)||(11773477-11773729)
[»] scaffold0049 (1 HSPs)
scaffold0049 (880-1115)||(38516-38752)
[»] scaffold0434 (1 HSPs)
scaffold0434 (843-1115)||(11139-11413)
[»] chr5 (1 HSPs)
chr5 (130-189)||(9464417-9464476)
[»] scaffold0144 (1 HSPs)
scaffold0144 (843-1115)||(39994-40267)
[»] scaffold1826 (1 HSPs)
scaffold1826 (136-205)||(17-86)
[»] scaffold0753 (2 HSPs)
scaffold0753 (136-205)||(130-199)
scaffold0753 (229-329)||(2273-2374)


Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 419
Target Start/End: Complemental strand, 32026363 - 32025953
Alignment:
Q  9 agaagcagagagaggaaaatatgactaaaactatgaagtttctttatgttctaattatgtttatttccatatttcttgttgcaagtgtctatgactctat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  32026363 agaagcagagagaggaaaatatgactaaaactatgaagtttctttatgttctaattatatttatttccatatttgttgttgcaagtgtctatgactctat 32026264  T
Q  109 tccttacgttaattctggtccttgtgtaacagataaagattgtccaaaagtttcgcaatataatattaggtgtcgtaaaggccaatgcgtaaggatccgt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  32026263 tccttacgttaattctggtccttgtgtaacagataaagattgtccaaaagtttcgcaatataatattaggtgtcgtaaaggtcaatgtgcaaggatccgt 32026164  T
Q  209 gtatgagatgaatgtgtaagttgtacaatatatcttatgctaaaatattcatgagatgtcatttagtttttgtgcatgcactaaataattgtatttttta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32026163 gtatgagatgaatgtgtaagttgtacaatatatcttatgctaaaatattcatgagatgtcatttagtttttgtgtatgcactaaataattgtatttttta 32026064  T
Q  309 tcttcttttttcctctaatttgatgtactttggacttattattttataatctaagatgatgacaatgaaatgaatcaaggtagaagagagttcaatttat 408  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  32026063 tcttcttttttcctctaatttgatgtactttggacttataattttatactctaagatgatgataatgaaatgaatcgaggtagaagagagttcaatttat 32025964  T
Q  409 agtttctcctt 419  Q
    |||||||||||    
T  32025963 agtttctcctt 32025953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 648 - 1135
Target Start/End: Complemental strand, 32024110 - 32023640
Alignment:
Q  648 actatttaacttctttatcaaattactttcgagttctctaaaatactcttgccttaattccttagtgacaaagtcgnnnnnnnnacagacgaaccagccc 747  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||        | ||||||| ||| ||    
T  32024110 actatttaacttctttatcgaattactatcgagttctctaaaatactcttgccttaattccttagtgacaaagtcgttttttttaaagacgaatcaggcc 32024011  T
Q  748 acgtaaaataacatcggggagaatcgaacttgagaccgtgagaagatcacactttaaaattcaaagccaacaccactaaaccaacccaagtgaaattagt 847  Q
    ||  ||| | ||| | |||||||||||| |||||||  |||||| ||||||||| || |||||||||||||| |||||||| ||||||||||||||||||    
T  32024010 acagaaattgacaccagggagaatcgaatttgagactatgagaaaatcacacttcaagattcaaagccaacatcactaaactaacccaagtgaaattagt 32023911  T
Q  848 gacatagtcgttagttctaaaataacacctaatcctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagttt 947  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32023910 gacatagtcgttagttctaaaataacatctaatcctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagttt 32023811  T
Q  948 gtatatattcctagactacataggaaaaactttcttatgtcaaagtattcataattcaaattctatttcacaatattaaccgcaaatcattttaaatgtg 1047  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||    
T  32023810 gtatatattcctagactacataggaaaaactttcttatgtcaaagtattcataattcaaattatgtttcacaatattaaccgcaaatcagttttaatgtg 32023711  T
Q  1048 atcaagagataaaatcattaaacacatagataacaaaaataattcaataaacttatttaataatcaaagatcaaatcacataataaag 1135  Q
    |||||||||||||||||||                 ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  32023710 atcaagagataaaatcatt-----------------aaataattagataaacttatttaataatcaaagatcaaatcacataataaag 32023640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 457 - 654
Target Start/End: Complemental strand, 32025916 - 32025719
Alignment:
Q  457 tggtgattttcacaagtgtacaaaatcattgaaagtgatatttaaaacgataaaccaaatgttgaactcaaggatttcttttaccgtcaaactatacaat 556  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32025916 tggtgattttcacaagtgtacaaaatcattaaaagtgatatttaaaacgataaaccaaatgttgaactcaaggatttcttttactgtcaaactatacaat 32025817  T
Q  557 tgaacaatttaaatggtttaaatgaataataaagaatatgtcatggatgagtttcacctggtttccaccttgaattgataattcggctgtgactattt 654  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||    
T  32025816 tgaacaatttaaatggtttaaatgaataataaagaatatgtcatggatgagtttcacctgatttccaccttgaattgataatttggctctgactattt 32025719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 862 - 1097
Target Start/End: Complemental strand, 10333130 - 10332894
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| |||||||   |||||| |||||| ||||||||||| |||| |||||| ||| ||||| || ||||||||    
T  10333130 ttctaaaacaactcctaattccttagtgaatttaagattagaattaagcatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattccta 10333031  T
Q  961 gactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataa 1059  Q
    || |||| ||| || | |||||||| ||||||  || || ||||||| |||| ||||||||||| ||||| |||||| |||||| || |||||   ||||    
T  10333030 gattacaaaggcaagaatttcttatctcaaagcgtttataaattcaacttctgtttcacaatataaaccgtaaatcaatttaaaggttatcaatcaataa 10332931  T
Q  1060 aatcattaaacacatagataacaaaaataattcaataa 1097  Q
    || |||||| ||   |||||| ||||| ||||||||||    
T  10332930 aagcattaagcatggagataagaaaaa-aattcaataa 10332894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 862 - 1097
Target Start/End: Complemental strand, 9330567 - 9330330
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| |||||||   ||||||  ||||| ||||||||||| |||| |||||| ||| ||||| || ||||||||    
T  9330567 ttctaaaacaactcctaattccttagtgaatttaagattagaattaaggatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattccta 9330468  T
Q  961 gactacataggaaaaactttcttatgtcaaagtattcataa-ttcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataa 1059  Q
    || |||| ||| || | |||||||| || |||  || |||| ||||| |||  ||||||||||| ||||| |||||| |||||| ||||||||   ||||    
T  9330467 gattacaaaggcaagaatttcttatctcgaagcgtttataaattcaacttccgtttcacaatataaaccgtaaatcaatttaaaggtgatcaatcaataa 9330368  T
Q  1060 aatcattaaacacatagataacaaaaataattcaataa 1097  Q
    || |||||| ||   |||||| ||||| ||||||||||    
T  9330367 aagcattaagcatggagataagaaaaacaattcaataa 9330330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 660 - 717
Target Start/End: Original strand, 12074518 - 12074575
Alignment:
Q  660 ctttatcaaattactttcgagttctctaaaatactcttgccttaattccttagtgaca 717  Q
    |||||||  |||||| |||| |||||||||| ||| ||||| ||||||||||||||||    
T  12074518 ctttatctcattactatcgaattctctaaaacacttttgccctaattccttagtgaca 12074575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 4e-44; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 21579465 - 21579648
Alignment:
Q  24 aaaatatgactaaaactatgaagtttctttatgttctaattatgtttatttccatatttcttgttgcaagtgtctatgactctattccttacgttaattc 123  Q
    |||||||| |||||||||||||||||||||||||||||||| | |||| |||||| |||||||||  ||| || | ||| ||||||||||||||||||      
T  21579465 aaaatatggctaaaactatgaagtttctttatgttctaattttatttagttccatgtttcttgttataagagtatctgattctattccttacgttaatat 21579564  T
Q  124 tggtccttgtgtaacagataaagattgtccaaaagtttcgcaatataatattaggtgtcgtaaaggccaatgcgtaaggatccg 207  Q
    |||||||||||||| |||||||||| ||| ||||||| | ||||||||||||| ||||||||| ||  |||| |||||||||||    
T  21579565 tggtccttgtgtaaaagataaagatcgtcgaaaagttccacaatataatattaagtgtcgtaatggagaatgtgtaaggatccg 21579648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 862 - 1097
Target Start/End: Complemental strand, 30758861 - 30758624
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| |||||||   |||||| |||||| ||||||||||| |||| |||||| ||| ||||| || ||||||||    
T  30758861 ttctaaaacaactcctaattccttagtgaatttaagattagaattaagcatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattccta 30758762  T
Q  961 gactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataa 1059  Q
    || |||| ||| || | |||||||| ||||||  || || ||||||| |||  ||||||||||| ||||| |||||| |||||| ||||||||   ||||    
T  30758761 gattacaaaggcaagaatttcttatctcaaagcgtttataaattcaacttccgtttcacaatataaaccgtaaatcaatttaaaggtgatcaatcaataa 30758662  T
Q  1060 aatcattaaacacatagataacaaaaataattcaataa 1097  Q
    || |||||| ||   |||||| ||||| ||||||||||    
T  30758661 aagcattaagcatggagataagaaaaacaattcaataa 30758624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 862 - 1097
Target Start/End: Complemental strand, 25137310 - 25137073
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| |||||||   |||||| |||||| ||||||||||| |||| |||||| ||| ||||| || ||||||||    
T  25137310 ttctaaaacaactcctaattcctcagtgaatttaagattagaattaagcatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattccta 25137211  T
Q  961 gactacataggaaaaactttcttatgtcaaa--gtattcataattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagata 1058  Q
    || |||| ||| || | |||||||| |||||  ||||  | ||||||| |||  ||||||||||| ||||| |||||| |||||| ||||||||   |||    
T  25137210 gattacaaaggcaagaatttcttatctcaaaacgtatata-aattcaacttccgtttcacaatataaaccgtaaatcaatttaaaggtgatcaatcaata 25137112  T
Q  1059 aaatcattaaacacatagataacaaaaataattcaataa 1097  Q
    ||| |||||| ||   |||||| ||||||||||||||||    
T  25137111 aaagcattaagcatggagataagaaaaataattcaataa 25137073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 843 - 1115
Target Start/End: Complemental strand, 23409925 - 23409652
Alignment:
Q  843 ttagtgacatagtcgttagttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaa 941  Q
    ||||||||| | || ||| | |||||||||| |||||| ||| |||||| ||||||||  |||||  |||||  ||||||||||| | ||||||||| ||    
T  23409925 ttagtgacaaaatcattaatcctaaaataacccctaattccttagtgaatttaagatcagaattatgcatgattgaacaagaattcttaattggtttcaa 23409826  T
Q  942 gagtttgtatatattcctagactacataggaaaaactttcttatgtcaaagtattcataattcaaattctatttcacaatattaaccgcaaatcatttta 1041  Q
    | ||||| || ||||| |||| |||| ||| || | | |||||| |||||   ||   ||||||| |||| ||||||||||| ||||| |||||| || |    
T  23409825 gggtttgcatctattcttagattacaaaggcaagaatctcttatctcaaacgtttataaattcaacttctgtttcacaatataaaccgtaaatcaattga 23409726  T
Q  1042 aatgtgatcaagagataaaatcattaaacacatagataacaaaaataattcaataaacttatttaataatcaaa 1115  Q
    || | |  ||||  |||||| ||||||  ||| |||||| |||||| ||||||||||||| || ||||||||||    
T  23409725 aaggcggccaagcaataaaaacattaagaacagagataagaaaaatgattcaataaacttcttcaataatcaaa 23409652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 843 - 1115
Target Start/End: Original strand, 9953881 - 9954155
Alignment:
Q  843 ttagtgacatagtcgttagttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaa 941  Q
    ||||||||| | || ||| | |||||||||| |||||| ||| |||||| |||||||   |||||| |||||  |||||||||||   ||||||||| ||    
T  9953881 ttagtgacaaaatcattaatcctaaaataacccctaattccttagtgaacttaagattagaattaagcatgattgaacaagaattcgtaattggtttcaa 9953980  T
Q  942 gagtttgtatatattcctagactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcatttt 1040  Q
    | ||||| || |||||||||| |||| ||| || | |||||||| ||||||  || || ||||||| |||  | ||||||||| ||||| |||||| |||    
T  9953981 gggtttgcatctattcctagattacaaaggcaagaatttcttatctcaaagcgtttataaattcaacttccgtatcacaatataaaccgtaaatcaattt 9954080  T
Q  1041 aaatgtgatcaagagataaaatcattaaacacatagataacaaaaataattcaataaacttatttaataatcaaa 1115  Q
    ||| | |  ||||  |||||| ||||||  | | |||||| |||||| |||||||||||||  | ||||||||||    
T  9954081 aaaggcggccaagcaataaaaacattaagaaaagagataagaaaaatgattcaataaacttcatcaataatcaaa 9954155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 477
Target Start/End: Original strand, 21579763 - 21579938
Alignment:
Q  302 ttttttatcttcttttttcctctaatttgatgtactttggacttattattttataatctaagatgatgacaatgaaatgaatcaaggtagaagagagttc 401  Q
    |||||||||||  |||| ||  |||||| ||||| |||| | |||| |||||||| | |||||||||| |||||||||  || |||||||  |||||||     
T  21579763 ttttttatctttgttttccccttaatttcatgtattttgaagttatgattttatactataagatgatggcaatgaaattgattaaggtagctgagagtta 21579862  T
Q  402 aatttatagtttctccttatcttgcaaatttttagatatgaccatggtctcttaatggtgattttcacaagtgtac 477  Q
    |||||||| | ||||||||||||| ||||||  |  ||| |||||||||| || ||||  ||||||  ||||||||    
T  21579863 aatttataatatctccttatcttgtaaatttagaagtataaccatggtctgttgatggcaattttcgaaagtgtac 21579938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 862 - 1094
Target Start/End: Complemental strand, 7747702 - 7747468
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||||||| |||||| ||| |||||| |||||||   |||||| |||||| |||||| |||| |||| |||||| ||  ||||| || ||||||||    
T  7747702 ttctaaaataactcctaattccttagtgaatttaagattagaattaagcatgaatgaacaaaaattctcaagtggtttcaaaggtttgcatctattccta 7747603  T
Q  961 gactacataggaaaaactttcttatgtcaaagtattcataa-ttcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataa 1059  Q
     | |||| ||| || | |||||||| ||||||  || |||| ||||| |||  ||||||||||| ||||| |||||| |||||| ||||| ||   ||||    
T  7747602 tattacaaaggcaagaatttcttatctcaaagagtttataaattcaacttccgtttcacaatataaaccgtaaatcaatttaaaggtgattaatcaataa 7747503  T
Q  1060 aatcattaaacacatagataacaaaaataattcaa 1094  Q
    || |||||| ||   |||||| ||||| |||||||    
T  7747502 aagcattaagcatggagataagaaaaacaattcaa 7747468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 15584245 - 15584321
Alignment:
Q  230 tgtacaatatatcttatgctaaaatatt-catgagatgtcatttagtttttgtgcatgcactaaataattgtatttt 305  Q
    |||||||||||||||||| || |||||| |||||||||||||||||||||||||| || |   ||||||||||||||    
T  15584245 tgtacaatatatcttatgatagaatatttcatgagatgtcatttagtttttgtgcttgtatcgaataattgtatttt 15584321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 1905133 - 1905188
Alignment:
Q  267 tcatttagtttttgtgcatgcactaaataattgtattttttatcttcttttttcct 322  Q
    ||||||||||||| ||||||||| ||||||||||||| ||| | ||||||||||||    
T  1905133 tcatttagtttttatgcatgcaccaaataattgtattattttttttcttttttcct 1905188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 1841707 - 1841745
Alignment:
Q  265 tgtcatttagtttttgtgcatgcactaaataattgtatt 303  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  1841707 tgtcatttagtttttgtgcatgcaccaaataattgtatt 1841745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 1872434 - 1872374
Alignment:
Q  24 aaaatatgactaaaactatgaagtttctttatgttctaattatgtttatttccatatttct 84  Q
    |||||||| || ||||| |||||||| |||||||||| ||| | |||||||||||||||||    
T  1872434 aaaatatggctgaaactctgaagtttgtttatgttctgattctatttatttccatatttct 1872374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 1881962 - 1881842
Alignment:
Q  36 aaactatgaagtttctttatgttctaattatgtttatttccatatttcttgttgcaagtgtctatgactctattccttacgttaattctggtccttgtgt 135  Q
    ||||| |||||||| |||||||||| ||| | |||||||||||||||| ||||| ||  || | ||| ||||||  || |  |  |||| |||||||| |    
T  1881962 aaactttgaagtttgtttatgttctgattctatttatttccatatttcatgttgtaatagtatgtgattctatttatttccctgtttctcgtccttgtat 1881863  T
Q  136 aacagataaagattgtccaaa 156  Q
    ||| |||||||||||||||||    
T  1881862 aactgataaagattgtccaaa 1881842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 843 - 1001
Target Start/End: Original strand, 23688553 - 23688713
Alignment:
Q  843 ttagtgacatagtcgttagttctaaaataacacctaat-cctaagtgaaa-ttaagatctaaattaaacatgaaagaacaagaattttcaattggtttta 940  Q
    ||||||||| | || ||| | |||||||||| |||||| ||| ||||||| |||||||   |||||| |||||  |||||||||||   ||||||||| |    
T  23688553 ttagtgacaaaatcattaatcctaaaataacccctaattccttagtgaaacttaagattagaattaagcatgattgaacaagaattcgtaattggtttca 23688652  T
Q  941 agagtttgtatatattcctagactacataggaaaaactttcttatgtcaaagtattcataa 1001  Q
    || ||||| || |||||||||| |||| ||| || | |||||||| |||||| ||| ||||    
T  23688653 agggtttgcatctattcctagattacaaaggcaagaatttcttatctcaaagcatttataa 23688713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 773 - 840
Target Start/End: Original strand, 19612645 - 19612712
Alignment:
Q  773 gaacttgagaccgtgagaagatcacactttaaaattcaaagccaacaccactaaaccaacccaagtga 840  Q
    |||| ||||||| ||||| || ||||||| || || | |||||||||||||||||||||| |||||||    
T  19612645 gaacatgagaccttgagaggagcacacttcaagatcccaagccaacaccactaaaccaactcaagtga 19612712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 1829284 - 1829230
Alignment:
Q  34 taaaactatgaagtttctttatgttctaattatgtttatttccatatttcttgtt 88  Q
    ||||||| |||||||| ||||| |||||||| | ||||||| |||||||||||||    
T  1829284 taaaactttgaagtttgtttatattctaattctatttatttgcatatttcttgtt 1829230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 1866120 - 1866079
Alignment:
Q  265 tgtcatttagtttttgtgcatgcactaaataattgtattttt 306  Q
    |||||||| ||||||||||||||||  |||||||||||||||    
T  1866120 tgtcatttggtttttgtgcatgcaccgaataattgtattttt 1866079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 17982640 - 17982599
Alignment:
Q  271 ttagtttttgtgcatgcactaaataattgtattttttatctt 312  Q
    ||||||||||||||||||  ||||||||||||||||| ||||    
T  17982640 ttagtttttgtgcatgcatcaaataattgtattttttttctt 17982599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 862 - 1097
Target Start/End: Complemental strand, 36215988 - 36215751
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| |||||||   |||||| |||||| |||||||||||||||| |||||| ||| ||||| || ||||||||    
T  36215988 ttctaaaacaactcctaattccttagtgaatttaagattagaattaagcatgaatgaacaagaattttcaagtggtttcaagggtttgcatctattccta 36215889  T
Q  961 gactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataa 1059  Q
    || |||| ||| || | |||||||| ||||||  || || ||||||| |||  ||||||||||| ||||| |||||| |||||| ||||||||   ||||    
T  36215888 gattacaaaggcaagaatttcttatctcaaagcgtttataaattcaacttccgtttcacaatataaaccgtaaatcaatttaaaggtgatcaatcaataa 36215789  T
Q  1060 aatcattaaacacatagataacaaaaataattcaataa 1097  Q
    || |||||| ||   |||||| ||||| ||||||||||    
T  36215788 aagcattaagcatggagataagaaaaacaattcaataa 36215751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 762 - 837
Target Start/End: Complemental strand, 3334850 - 3334775
Alignment:
Q  762 cggggagaatcgaacttgagaccgtgagaagatcacactttaaaattcaaagccaacaccactaaaccaacccaag 837  Q
    |||| |||||||||||||||||| |||||||| |||||| ||| ||   ||||||||| ||||  |||||||||||    
T  3334850 cgggaagaatcgaacttgagaccttgagaagagcacactctaagatctcaagccaacatcactggaccaacccaag 3334775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 5e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 862 - 1095
Target Start/End: Original strand, 11925589 - 11925824
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| |||||||   |||||| |||||| ||||||||||| |||| |||||| ||| ||||| || ||||||||    
T  11925589 ttctaaaacaactcctaattccttagtgaatttaagattagaattaagcatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattccta 11925688  T
Q  961 gactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataa 1059  Q
    || |||| ||| || | |||||||| ||||||  || || ||||||| |||  ||||||||||| ||||| |||||| |||||||||||||||   ||||    
T  11925689 gattacaaaggcaagaatttcttatatcaaagcgtttataaattcaacttcagtttcacaatataaaccgtaaatcaatttaaatgtgatcaatcaataa 11925788  T
Q  1060 aatcattaaacacatagataacaaaaataattcaat 1095  Q
    || |||||| ||   |||||| ||||| ||||||||    
T  11925789 aagcattaagcatggagataagaaaaacaattcaat 11925824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 843 - 1115
Target Start/End: Complemental strand, 41363295 - 41363021
Alignment:
Q  843 ttagtgacatagtcgttagttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaa 941  Q
    ||||||||| | || ||| | |||||||||| |||||| ||| |||||| |||||||   |||||| ||  |  ||||||||||||  ||||||||| ||    
T  41363295 ttagtgacaaaatcattaatcctaaaataacccctaattccttagtgaatttaagattagaattaagcaatattgaacaagaatttgtaattggtttcaa 41363196  T
Q  942 gagtttgtatatattcctagactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcatttt 1040  Q
    | ||||| || |||||||||| |||| ||  || | |||||||| ||||||  || || |||| || |||| ||||||||||| ||||| |||||| |||    
T  41363195 gggtttgcatctattcctagattacaaagtcaagaatttcttatctcaaagcgtttataaatttaacttctgtttcacaatataaaccgtaaatcaattt 41363096  T
Q  1041 aaatgtgatcaagagataaaatcattaaacacatagataacaaaaataattcaataaacttatttaataatcaaa 1115  Q
    ||| | | |||||  |||||| ||||||  | | | |||| |||||| ||||||||||||| || ||||||||||    
T  41363095 aaaggcggtcaagcaataaaagcattaagaaaagatataagaaaaatgattcaataaacttcttcaataatcaaa 41363021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 862 - 992
Target Start/End: Original strand, 44679720 - 44679851
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| ||||| |   |||||| |||||| ||||||||||| |||| |||||| ||| ||||| || ||||||||    
T  44679720 ttctaaaacaactcctaattccttagtgaatttaaggttagaattaagcatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattccta 44679819  T
Q  961 gactacataggaaaaactttcttatgtcaaag 992  Q
    ||||||| |||||| | |||||||| ||||||    
T  44679820 gactacaaaggaaagaatttcttatctcaaag 44679851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 8e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 862 - 1097
Target Start/End: Complemental strand, 28871954 - 28871717
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| |||||||   |||||| |||||| ||||||||||| |||| |||||| ||| ||||| || ||||||||    
T  28871954 ttctaaaagaactcctaattccttagtgaatttaagattagaattaagcatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattccta 28871855  T
Q  961 gactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataa 1059  Q
    || |||| ||| || | |||||||| ||||||  || || ||||||| |||  ||||||||||| ||||| |||||| |||||| ||||||||   ||||    
T  28871854 gattacaaaggcaagaatttcttatctcaaagcgtttataaattcaacttccgtttcacaatataaaccgtaaatcaatttaaaggtgatcaatcaataa 28871755  T
Q  1060 aatcattaaacacatagataacaaaaataattcaataa 1097  Q
    || |||||| ||   |||||| ||||| ||||||||||    
T  28871754 aagcattaagcatggagataagaaaaacaattcaataa 28871717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 864 - 1115
Target Start/End: Complemental strand, 35023958 - 35023706
Alignment:
Q  864 ctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattcctaga 962  Q
    |||||| || ||||||| ||| |||||| |||||||   |||||| ||||||||||||||||||   || |||||| ||| ||||| || ||||||||||    
T  35023958 ctaaaaaaaaacctaattccttagtgaatttaagattagaattaagcatgaaagaacaagaattcaaaaatggtttcaagggtttgcatctattcctaga 35023859  T
Q  963 ctacataggaaaaactttcttatgtcaaagtattcataa-ttcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataaaa 1061  Q
     |||| ||| || | |||||||| |||| | ||| |||| ||||| |||  ||||||||||| ||| | |||||| |||||| | |  ||||  ||||||    
T  35023858 ttacaaaggcaataatttcttatctcaa-gcatttataaattcaacttccgtttcacaatataaactgtaaatcaatttaaaggcggccaagcaataaaa 35023760  T
Q  1062 tcattaaacacatagataacaaaaataattcaataaacttatttaataatcaaa 1115  Q
     ||||||  ||| |||||| |||||| |||||||||||||||| ||||||||||    
T  35023759 gcattaagaacagagataagaaaaatgattcaataaacttattcaataatcaaa 35023706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 880 - 1097
Target Start/End: Complemental strand, 33354253 - 33354035
Alignment:
Q  880 tcctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattcctagactacataggaaaaactt 979  Q
    |||| |||||| |||||||   |||||| ||| || ||||||||||| |||| |||||| ||| ||||| || |||||||||| |||| ||| || | ||    
T  33354253 tccttagtgaatttaagattagaattaagcataaatgaacaagaattctcaagtggtttcaagggtttgcatctattcctagattacaaaggcaagaatt 33354154  T
Q  980 tcttatgtcaaagtattcataa-ttcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataaaatcattaaacacatagat 1078  Q
    |||||| ||||||  || |||| ||| |   |  ||||||||||| ||||| |||||| |||||| ||||||||   |||||| |||||| ||   ||||    
T  33354153 tcttatctcaaagcgtttataaattccacccccgtttcacaatataaaccgtaaatcaatttaaaggtgatcaatcaataaaagcattaagcatggagat 33354054  T
Q  1079 aacaaaaataattcaataa 1097  Q
    || ||||||||||||||||    
T  33354053 aagaaaaataattcaataa 33354035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 864 - 1115
Target Start/End: Complemental strand, 2880210 - 2879953
Alignment:
Q  864 ctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattcctaga 962  Q
    |||||||||  |||||| ||| |||||| |||||||   |||||| |||||  |||||||||||   ||||||||| ||| ||||| || ||||||||||    
T  2880210 ctaaaataatccctaattccttagtgaatttaagattagaattaagcatgattgaacaagaattcgtaattggtttcaagggtttgcatctattcctaga 2880111  T
Q  963 ctacataggaaaaactttcttatgtcaaagtattcataa-----ttcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagat 1057  Q
     |||| ||| || | |||||||| | ||||  || ||||     ||||| |||| ||||||||||| ||||| | |||| |||||| | |  ||||  ||    
T  2880110 ttacaaaggcaataatttcttatctgaaagcgtttataaattcattcaacttctgtttcacaatataaaccgtatatcaatttaaaggcggccaagcaat 2880011  T
Q  1058 aaaatcattaaacacatagataacaaaaataattcaataaacttatttaataatcaaa 1115  Q
    |||| ||||||  | | |||||| |||||| ||||||||||||| || ||||||||||    
T  2880010 aaaagcattaagaatagagataagaaaaatgattcaataaacttcttcaataatcaaa 2879953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 8e-24; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 909 - 1097
Target Start/End: Original strand, 3216105 - 3216293
Alignment:
Q  909 catgaaagaacaagaattttcaattggttttaagagtttgtatatattcctagactacataggaaaaactttcttatgtcaaagtattcataa-ttcaaa 1007  Q
    |||||| ||||||||||| ||||| ||||| ||| ||||| || |||||||||| |||| ||| || | |||||||| |||||||||| |||| |||||     
T  3216105 catgaatgaacaagaattctcaat-ggtttcaagggtttgcatctattcctagattacaaaggcaagaatttcttatctcaaagtatttataaattcaac 3216203  T
Q  1008 ttctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataaaatcattaaacacatagataacaaaaataattcaataa 1097  Q
    |||  ||||||||||| ||||| |||||| |||||| ||||||||   |||||| |||||| ||   |||||| ||||||||||||||||    
T  3216204 ttccgtttcacaatataaaccgtaaatcaatttaaaggtgatcaatcaataaaagcattaagcatggagataagaaaaataattcaataa 3216293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 862 - 1097
Target Start/End: Original strand, 9352972 - 9353209
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| |||||||   |||||| |||||| ||||||||||| |||| |||||| ||| ||||| || ||||||||    
T  9352972 ttctaaaacaactcctaattccttagtgaatttaagattagaattaagcatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattccta 9353071  T
Q  961 gactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataa 1059  Q
    || |||| ||| || | |||||||| ||||||  || || ||||||| |||  ||||||||||| ||||| |||||| |||||| ||||||||   ||||    
T  9353072 gattacaaaggcaagaatttcttatctcaaagcgtttataaattcaacttccgtttcacaatataaaccgtaaatcaatttaaaggtgatcaatcaataa 9353171  T
Q  1060 aatcattaaacacatagataacaaaaataattcaataa 1097  Q
    || |||||| ||   |||||| ||||| ||||||||||    
T  9353172 aagcattaagcatggagataagaaaaacaattcaataa 9353209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 843 - 1115
Target Start/End: Complemental strand, 16420486 - 16420213
Alignment:
Q  843 ttagtgacatagtcgttagttctaaaataacacctaatc-ctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaa 941  Q
    ||||||||| | || ||| | |||||||||| ||||||  || |||||| ||||||||  |||||| |||||  ||||||||||| | ||||||||||||    
T  16420486 ttagtgacaaaatcattaatcctaaaataacccctaattacttagtgaatttaagatcagaattaagcatgattgaacaagaattcttaattggttttaa 16420387  T
Q  942 gagtttgtatatattcctagactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcatttt 1040  Q
    | ||||| || |||||||||| |||| ||| || | | |||||| || |||  || || ||||||| |||  ||||||||||| ||||| |||||| |||    
T  16420386 gggtttgcatctattcctagattacaaaggcaagaatctcttatctc-aagcctttataaattcaatttccgtttcacaatataaaccgtaaatcaattt 16420288  T
Q  1041 aaatgtgatcaagagataaaatcattaaacacatagataacaaaaataattcaataaacttatttaataatcaaa 1115  Q
    ||| | | |||||  |||| | ||||||  ||| |||||| |||||| ||||||||||||| || ||||||||||    
T  16420287 aaaggcggtcaagcaataatagcattaagaacaaagataagaaaaatgattcaataaacttcttcaataatcaaa 16420213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 862 - 1097
Target Start/End: Original strand, 6673400 - 6673637
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| |||||||   |||||| |||||| ||||||||||| |||| |||||| ||| ||||| || ||||||||    
T  6673400 ttctaaaacaactcctaattccttagtgaatttaagattagaattaagcatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattccta 6673499  T
Q  961 gactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataa 1059  Q
    || |||| ||| || | |||||||| ||||||  || || ||||||| |||  |||||||| || ||||| |||||| |||||| ||||||||   ||||    
T  6673500 gattacaaaggcaagaatttcttatctcaaagcgtttataaattcaacttccgtttcacaaaataaaccgtaaatcaatttaaaggtgatcaatcaataa 6673599  T
Q  1060 aatcattaaacacatagataacaaaaataattcaataa 1097  Q
    || |||||| ||   |||||| ||||| ||||||||||    
T  6673600 aagcattaagcatggagataagaaaaacaattcaataa 6673637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 843 - 1119
Target Start/End: Complemental strand, 53438700 - 53438422
Alignment:
Q  843 ttagtgacatagtcgttagttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaa 941  Q
    ||||||||| | || ||| | |||||||||  |||||| ||| |||||| |||||||   |||||| |||||  |||||||||||   ||||||||| ||    
T  53438700 ttagtgacaaaatcattaatcctaaaataatccctaattccttagtgaatttaagattagaattaagcatgattgaacaagaattcgtaattggtttcaa 53438601  T
Q  942 gagtttgtatatattcctagactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcatttt 1040  Q
    | ||||| || |||||||||| |||| ||| || | |||||||| ||||||  || || ||||||| |||  ||||||||||| ||||| | |||| |||    
T  53438600 gggtttgcatctattcctagattacaaaggcaagaatttcttatttcaaagcgtttataaattcaacttccgtttcacaatataaaccgtatatcaattt 53438501  T
Q  1041 aaatgtgatcaagagataaaatcattaaacacatagataacaaaaataattcaataaacttatttaataatcaaagatc 1119  Q
    ||| | |  ||||  |||||| ||||||  ||| |||||| |||||| ||||||||||||| || |||||||| |||||    
T  53438500 aaaggcggccaagcaataaaagcattaataacagagataagaaaaatgattcaataaacttcttcaataatcagagatc 53438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 843 - 1113
Target Start/End: Complemental strand, 53437267 - 53436995
Alignment:
Q  843 ttagtgacatagtcgttagttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaa 941  Q
    ||||||||| | || ||| | |||||||||  |||||| ||| |||||| |||||||   |||||| |||||  |||||||||||   ||||||||| ||    
T  53437267 ttagtgacaaaatcattaatcctaaaataatccctaattccttagtgaatttaagattagaattaagcatgattgaacaagaattcgtaattggtttcaa 53437168  T
Q  942 gagtttgtatatattcctagactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcatttt 1040  Q
    | ||||| || |||||||||| |||| ||| || | |||||||| ||||||  || || ||||||| |||  ||||||||||| ||||| | |||| |||    
T  53437167 gggtttgcatctattcctagattacaaaggcaagaatttcttatttcaaagcgtttataaattcaacttccgtttcacaatataaaccgtatatcaattt 53437068  T
Q  1041 aaatgtgatcaagagataaaatcattaaacacatagataacaaaaataattcaataaacttatttaataatca 1113  Q
    ||| | |  ||||  |||||| ||||||  ||| |||||| |||||| ||||||||||||| || ||||||||    
T  53437067 aaaggcggccaagcaataaaagcattaataacagagataagaaaaatgattcaataaacttcttcaataatca 53436995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1000 - 1115
Target Start/End: Original strand, 46671270 - 46671385
Alignment:
Q  1000 aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataaaatcattaaacacatagataacaaaaataattcaataaac 1099  Q
    ||||||| |||  ||||||||||| ||||| |||||| |||||| | |  ||||  |||||| |||||| |||| |||||| |||||| |||||||||||    
T  46671270 aattcaacttccgtttcacaatataaaccgtaaatcaatttaaaggcggccaagcaataaaagcattaagcacagagataagaaaaatgattcaataaac 46671369  T
Q  1100 ttatttaataatcaaa 1115  Q
    ||||| ||||||||||    
T  46671370 ttattcaataatcaaa 46671385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 862 - 992
Target Start/End: Original strand, 9341871 - 9342002
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| ||| |||   |||||| |||||| ||||||||||| |||| |||||| ||| ||||| || ||||||||    
T  9341871 ttctaaaacaactcctaattccttagtgaatttaggattagaattaagcatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattccta 9341970  T
Q  961 gactacataggaaaaactttcttatgtcaaag 992  Q
    || |||| ||| || | |||||||| ||||||    
T  9341971 gattacaaaggcaagaatttcttatctcaaag 9342002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 15465554 - 15465491
Alignment:
Q  24 aaaatatgactaaaactatgaagtttctttatgttctaattatgtttatttccatatttcttgt 87  Q
    |||||||| || ||||| |||||||| |||||||||| ||| || |||||||||||||||||||    
T  15465554 aaaatatggctgaaactctgaagtttgtttatgttctgattctgcttatttccatatttcttgt 15465491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 857 - 938
Target Start/End: Complemental strand, 987725 - 987643
Alignment:
Q  857 gttagttctaaaataacacctaatccta-agtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttt 938  Q
    |||| |||||||||||| | |||| ||  ||||||||||||||   |||||| |||||| |||||||||||||||||||||||    
T  987725 gttaattctaaaataactcataattctttagtgaaattaagattagaattaagcatgaatgaacaagaattttcaattggttt 987643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 9195526 - 9195456
Alignment:
Q  229 ttgtacaatatatcttatgctaaaatattc-atgagatgtcatttagtttttgtgcatgcactaaataatt 298  Q
    |||||||||||| ||||||||| ||||||| ||  | ||||||||||||||||| |||||||| |||||||    
T  9195526 ttgtacaatataccttatgctagaatattccatttgttgtcatttagtttttgttcatgcactcaataatt 9195456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 369
Target Start/End: Complemental strand, 9244754 - 9244613
Alignment:
Q  229 ttgtacaatatatcttatgctaaaatattc-atgagatgtcatttagtttttgtgcatgcactaaataattgtattttttatcttcttttttcctctaat 327  Q
    ||||||| |||| ||||||||| ||||||| |   | |||||||||||||||||| ||||||| ||||||| |  ||||  |||||| |||||| |||||    
T  9244754 ttgtacactataccttatgctagaatattccacttgttgtcatttagtttttgtgaatgcactcaataattattattttcttcttctattttcccctaat 9244655  T
Q  328 ttgatgtactttggacttattattttataatctaagatgatg 369  Q
    || | | || ||  | |||| ||||| |||||||||||||||    
T  9244654 ttcaaggaccttaaagttatgattttgtaatctaagatgatg 9244613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 379
Target Start/End: Complemental strand, 5719666 - 5719518
Alignment:
Q  229 ttgtacaatatatcttatgctaaaatatt-catgagatgtcatttagtttttgtgcatgcactaaataattgtattttttatcttcttttttcctctaat 327  Q
    |||||||||||| || |||||| |||||| ||   | |||||||||||||||||||||| ||| ||||||  |||||||  |||||| |||||| |||||    
T  5719666 ttgtacaatatacctcatgctagaatatttcacttgttgtcatttagtttttgtgcatgtactcaataat--tatttttcttcttctgttttcc-ctaat 5719570  T
Q  328 ttgatgtactttggacttattattttataatctaagatgatgacaatgaaat 379  Q
    |  ||| |||||  | |||| ||||| ||||||| |||||||  ||||||||    
T  5719569 tccatggactttaaagttatgattttgtaatctatgatgatggaaatgaaat 5719518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 862 - 1097
Target Start/End: Original strand, 23208 - 23445
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| |||||||   |||||| |||||| ||||||||||| |||| |||||| ||| ||||| || ||||||||    
T  23208 ttctaaaacaactcctaattccttagtgaatttaagattagaattaagcatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattccta 23307  T
Q  961 gactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataa 1059  Q
    || |||| ||| || | |||||||| ||||||  || || ||||||| ||| ||||||||| || ||||| |||||| ||||||  |||||||   ||||    
T  23308 gattacaaaggcaagaatttcttatctcaaagcgtttataaattcaacttcaatttcacaaaataaaccgtaaatcaatttaaagatgatcaatcaataa 23407  T
Q  1060 aatcattaaacacatagataacaaaaataattcaataa 1097  Q
    || |||||| ||   |||||| ||||| ||||||||||    
T  23408 aagcattaagcatggagataagaaaaacaattcaataa 23445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 862 - 1097
Target Start/End: Original strand, 24212 - 24449
Alignment:
Q  862 ttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattccta 960  Q
    |||||||| ||| |||||| ||| |||||| |||||||   |||||| |||||| ||||||||||| |||| |||||| ||| ||||| || ||||||||    
T  24212 ttctaaaacaactcctaattccttagtgaatttaagattagaattaagcatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattccta 24311  T
Q  961 gactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataa 1059  Q
    || |||| ||| || | |||||||| ||||||  || || ||||||| ||| ||||||||| || ||||| |||||| ||||||  |||||||   ||||    
T  24312 gattacaaaggcaagaatttcttatctcaaagcgtttataaattcaacttcaatttcacaaaataaaccgtaaatcaatttaaagatgatcaatcaataa 24411  T
Q  1060 aatcattaaacacatagataacaaaaataattcaataa 1097  Q
    || |||||| ||   |||||| ||||| ||||||||||    
T  24412 aagcattaagcatggagataagaaaaacaattcaataa 24449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 843 - 1115
Target Start/End: Complemental strand, 275893 - 275620
Alignment:
Q  843 ttagtgacatagtcgttagttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaa 941  Q
    ||||||||| | || ||| || ||||||||  |||||| ||| ||||||  |||||||  |||||| |||||  |||||||| || | ||||||||| ||    
T  275893 ttagtgacaaaatcattaattttaaaataatccctaattccttagtgaatctaagatcagaattaagcatgattgaacaagagttcttaattggtttcaa 275794  T
Q  942 gagtttgtatatattcctagactacataggaaaaactttcttatgtcaaagtattcataattcaaattctatttcacaatattaaccgcaaatcatttta 1041  Q
    | ||||| || |||||||||| |||| ||| || | | |||||| |||||   ||   ||||||| |||  ||||||||||| ||||| |||||| ||||    
T  275793 gggtttgcatctattcctagattacaaaggcaagaatctcttatctcaaacgtttataaattcaacttccgtttcacaatataaaccgtaaatcaattta 275694  T
Q  1042 aatgtgatcaagagataaaatcattaaacacatagataacaaaaataattcaataaacttatttaataatcaaa 1115  Q
    || | |  ||||  |||||| ||||||  ||| |||||| |||||| ||||||||||||| || ||||||||||    
T  275693 aaggcggccaagcaataaaagcattaagaacagagataagaaaaatgattcaataaacttcttcaataatcaaa 275620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 885 - 1101
Target Start/End: Original strand, 27088563 - 27088779
Alignment:
Q  885 agtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattcctagactacataggaaaaactttctta 984  Q
    |||||| |||||||   |||||| |||||| ||||||||||| ||| ||||||||||| ||||| || ||||||||||  ||| ||| ||||  ||||||    
T  27088563 agtgaatttaagattagaattaagcatgaatgaacaagaattctcatttggttttaagggtttgcatctattcctagatcacaaaggcaaaaacttctta 27088662  T
Q  985 tgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataaaatcattaaacacatagataacaa 1083  Q
    | || |||| || || ||||||| |||  ||| ||||||| ||||| |||||| |||||| ||||||||   ||||||  |||||  ||| |||||| ||    
T  27088663 tctc-aagtgtttataaattcaacttccgttttacaatataaaccgtaaatcaatttaaaggtgatcaatcaataaaagtattaagaacagagataagaa 27088761  T
Q  1084 aaataattcaataaactt 1101  Q
    |||| ||| |||||||||    
T  27088762 aaatgatttaataaactt 27088779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 880 - 1052
Target Start/End: Complemental strand, 559933 - 559760
Alignment:
Q  880 tcctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattcctagactacataggaaaaactt 979  Q
    |||| |||||| |||||||   |||||| |||||| ||||||||||| |||| |||||| ||| ||||| || |||||||||| |||| ||| || | ||    
T  559933 tccttagtgaatttaagattagaattaagcatgaatgaacaagaattctcaagtggtttcaagggtttgcatctattcctagattacaaaggcaagaatt 559834  T
Q  980 tcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaa 1052  Q
    || ||||||||||  || || ||||||| |||  ||||||||||| | | | |||||| |||||| ||||||||    
T  559833 tcatatgtcaaagcgtttataaattcaacttccgtttcacaatataatctgtaaatcaatttaaaggtgatcaa 559760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 864 - 1115
Target Start/End: Original strand, 11773477 - 11773729
Alignment:
Q  864 ctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattcctaga 962  Q
    |||||||||| |||||| ||| |||||| |||||||   |||||| ||| |  |||||||||||   ||||||||| ||| ||||| || ||||||||||    
T  11773477 ctaaaataacccctaattccttagtgaacttaagattagaattaagcat-attgaacaagaattcgtaattggtttcaagggtttgcatctattcctaga 11773575  T
Q  963 ctacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataaaa 1061  Q
     |||| ||| || | ||| |||| ||||||  || || ||||||| |||  | ||||||||| ||||| |||||| |||||| | |  ||||  ||||||    
T  11773576 ttacaaaggcaagaatttattatctcaaagcgtttataaattcaacttccgtatcacaatataaaccgtaaatcaatttaaaggcggccaagcaataaaa 11773675  T
Q  1062 tcattaaacacatagataacaaaaataattcaataaacttatttaataatcaaa 1115  Q
     ||||||  | | |||||| |||||| |||||||||||||  | ||||||||||    
T  11773676 gcattaagaaaagagataagaaaaatgattcaataaacttcatcaataatcaaa 11773729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 45; Significance: 5e-16; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 880 - 1115
Target Start/End: Original strand, 38516 - 38752
Alignment:
Q  880 tcctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaagagtttgtatatattcctagactacataggaaaaactt 979  Q
    |||| |||||| |||||||   |||||| |||||| |||||| |||| |||| |||||| ||| ||||| || |||||||| | |||| ||| || | ||    
T  38516 tccttagtgaatttaagattagaattaagcatgaatgaacaaaaattctcaagtggtttcaagggtttgcatctattcctaaattacaaaggcaagaatt 38615  T
Q  980 tcttatgtcaaagtattcataa-ttcaaattctatttcacaatattaaccgcaaatcattttaaatgtgatcaagagataaaatcattaaacacatagat 1078  Q
    |||||| ||||||  || |||| ||||| |||  ||||||||||| ||||| |||||| |||||| | |  ||||  |||||| | ||||  ||| ||||    
T  38616 tcttatctcaaagcgtttataaattcaacttccgtttcacaatataaaccgtaaatcaatttaaaggcggccaagcaataaaagctttaagaacagagat 38715  T
Q  1079 aacaaaaataattcaataaacttatttaataatcaaa 1115  Q
    || |||||| |||||||||||||  | ||||||||||    
T  38716 aagaaaaatgattcaataaacttcatcaataatcaaa 38752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 843 - 1115
Target Start/End: Complemental strand, 11413 - 11139
Alignment:
Q  843 ttagtgacatagtcgttagttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaa 941  Q
    ||||||||| | || ||| | |||||||||| |||||| ||| |||||| |||||||   |||||| ||| |  ||||||||||| |||| ||||||  |    
T  11413 ttagtgacaaaatcattaatcctaaaataacccctaattccttagtgaatttaagattataattaagcataattgaacaagaattctcaagtggtttcta 11314  T
Q  942 gagtttgtatatattcctagactacataggaaaaactttcttatgtcaaagtattcat-aattcaaattctatttcacaatattaaccgcaaatcatttt 1040  Q
    | ||||| || |||||||||| |||| |||||| | |||||||| ||||||| || || ||||||| |||   ||| |||||| ||||| |||||| |||    
T  11313 gggtttgcatctattcctagattacaaaggaaagaatttcttatctcaaagtgtttataaattcaacttccgattcccaatataaaccgtaaatcaattt 11214  T
Q  1041 aaatgtgatcaagagataaaatcattaaacacatagataacaaaaataattcaataaacttatttaataatcaaa 1115  Q
    | | | |  ||||  |||||| ||||||   || |||||| |||||| |||||||||||||  | ||||||||||    
T  11213 agaggcgggcaagcaataaaagcattaagagcagagataagaaaaatgattcaataaacttcatcaataatcaaa 11139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 9464417 - 9464476
Alignment:
Q  130 ttgtgtaacagataaagattgtccaaaagtttcgcaatataatattaggtgtcgtaaagg 189  Q
    ||||||||| |||||||||||||||||| ||    |||||||||||||||||||||||||    
T  9464417 ttgtgtaacggataaagattgtccaaaatttaaaaaatataatattaggtgtcgtaaagg 9464476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 843 - 1115
Target Start/End: Original strand, 39994 - 40267
Alignment:
Q  843 ttagtgacatagtcgttagttctaaaataacacctaat-cctaagtgaaattaagatctaaattaaacatgaaagaacaagaattttcaattggttttaa 941  Q
    ||||||||| | || ||| | |||||||||  |||||| ||| |||||| |||||||   |||||| |||||  |||||||||||   ||||| ||| ||    
T  39994 ttagtgacaaaatcattaatcctaaaataatccctaattccttagtgaatttaagattagaattaagcatgattgaacaagaattcgtaattgatttcaa 40093  T
Q  942 gagtttgtatatattcctagactacataggaaaaactttcttatgtcaaagtattcataa-ttcaaattctatttcacaatattaaccgcaaatcatttt 1040  Q
    | ||||| || |||||||||| |||| | | || | |||||||| |||| |  || |||| ||||| |||  ||||||||||| ||| | |||||| |||    
T  40094 gggtttgcatctattcctagattacaaaagcaagaatttcttatctcaa-gcgtttataaattcaacttccgtttcacaatataaacagtaaatcaattt 40192  T
Q  1041 aaatgtgatcaagagataaaatcattaaacacatagataacaaaaataattcaataaacttatttaataatcaaa 1115  Q
    ||| | |  ||||  |||||| ||||||  ||| |||||| |||||| ||||||||||||| || ||||||||||    
T  40193 aaaggcggccaagcaataaaagcattaagaacagagataagaaaaatgattcaataaacttcttcaataatcaaa 40267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1826 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold1826
Description:

Target: scaffold1826; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 86 - 17
Alignment:
Q  136 aacagataaagattgtccaaaagtttcgcaatataatattaggtgtcgtaaaggccaatgcgtaaggatc 205  Q
    ||||||||||||||||||||||  |  |  |  ||||||||||||||||||||||||||| |||||||||    
T  86 aacagataaagattgtccaaaatatcagagagctaatattaggtgtcgtaaaggccaatgtgtaaggatc 17  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 130 - 199
Alignment:
Q  136 aacagataaagattgtccaaaagtttcgcaatataatattaggtgtcgtaaaggccaatgcgtaaggatc 205  Q
    ||||||||||||||||||||||  |  |  |  ||||||||||||||||||||||||||| |||||||||    
T  130 aacagataaagattgtccaaaatatcagagagctaatattaggtgtcgtaaaggccaatgtgtaaggatc 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 2273 - 2374
Alignment:
Q  229 ttgtacaatatatcttatgctaaaatattc-atgagatgtcatttagtttttgtgcatgcactaaataattgtattttttatcttcttttttcctctaat 327  Q
    ||||||| |||| ||||||||| ||||||| |   | |||||||||||||||||||||||||| ||||||| |  ||||  |||||| |||||| |||||    
T  2273 ttgtacactataccttatgctagaatattctacttgttgtcatttagtttttgtgcatgcactcaataattattattttcttcttctattttcccctaat 2372  T
Q  328 tt 329  Q
    ||    
T  2373 tt 2374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University