View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11701_high_19 (Length: 337)
Name: NF11701_high_19
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 10465311 - 10465000
Alignment:
| Q |
11 |
caaagggattcaagaaacaacccagctcaaagggaactaagcgacataaaagtttccttgagtgtcagcccaagaaaagaagtgctcctccaagtaaaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10465311 |
caaagggattcaagaaacaacccagctcaaagggaactaagcgacataaaagtttccttgagcgtcagcccaagaaaagaagtgctcctccaagtaaaca |
10465212 |
T |
|
| Q |
111 |
tgctcaatctagccgtgtcgcacctcaaagaagttcaaaggtatataagtcgatacatagattacttgttttagttttacatgtactttcacttatttta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10465211 |
cgctcaatctagccgtgtcgcacctcaaagaagttcacaggtatataagtcgatacatagattacttgttttagttttacatgtactttcacttatttta |
10465112 |
T |
|
| Q |
211 |
atgttacataatcattttaggttagagaattaacaactaatatggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10465111 |
atgttacataatcattttaggttagagaattaacaactaatatggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtga |
10465012 |
T |
|
| Q |
311 |
ggatatgtttgt |
322 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10465011 |
ggatatgtttgt |
10465000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 43734963 - 43734652
Alignment:
| Q |
11 |
caaagggattcaagaaacaacccagctcaaagggaactaagcgacataaaagtttccttgagtgtcagcccaagaaaagaagtgctcctccaagtaaaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43734963 |
caaagggattcaagaaacaacccagctcaaagggaactaagcgacataaaagtttccttgagcgtcagcccaagaaaagaagtgctcctccaagtaaaca |
43734864 |
T |
|
| Q |
111 |
tgctcaatctagccgtgtcgcacctcaaagaagttcaaaggtatataagtcgatacatagattacttgttttagttttacatgtactttcacttatttta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43734863 |
cgctcaatctagccgtgtcgcacctcaaagaagttcacaggtatataagtcgatacatagattacttgttttagttttacatgtactttcacttatttta |
43734764 |
T |
|
| Q |
211 |
atgttacataatcattttaggttagagaattaacaactaatatggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43734763 |
atgttacataatcattttaggttagagaattaacaactaatatggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtga |
43734664 |
T |
|
| Q |
311 |
ggatatgtttgt |
322 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43734663 |
ggatatgtttgt |
43734652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 50673842 - 50673533
Alignment:
| Q |
11 |
caaagggattcaagaaacaacccagctcaaagggaactaagcgacataaaagtttccttgagtgtcagcccaagaaaagaagtgctcctccaagtaaaca |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50673842 |
caaagggattcaagaaacaacccagctgaaagggaactaagcgacataaaagtttccttgagcgtcagcccaagaaaagaagtgctcctccaagtaaaca |
50673743 |
T |
|
| Q |
111 |
tgctcaatctagccgtgtcgcacctcaaagaagttcaaaggtatataagtcgatacatagattacttgttttagttttacatgtactttcacttatttta |
210 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50673742 |
cgctcaatctagccgtgtcaaacctcaaagaagttcacaggtatataagtcgatacatagattacttgttttagttttacatgtactttcacttatttta |
50673643 |
T |
|
| Q |
211 |
atgttacataatcattttaggttagagaattaacaactaatatggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
50673642 |
atgttacataatcattttaggttagagaattaacaactaatatggttgatggagtatcttgttccgcgcctccaacttatgagcctccgctagtacgtga |
50673543 |
T |
|
| Q |
311 |
ggatatgttt |
320 |
Q |
| |
|
|||||||||| |
|
|
| T |
50673542 |
ggatatgttt |
50673533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 11474218 - 11474275
Alignment:
| Q |
254 |
ggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag |
311 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||| | ||||| |||| |
|
|
| T |
11474218 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgag |
11474275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 28245833 - 28245776
Alignment:
| Q |
254 |
ggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag |
311 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||| | ||||| |||| |
|
|
| T |
28245833 |
ggttgatggagtatcttgttttgcgcctacaacttatgagcccccacaagcacatgag |
28245776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 50019323 - 50019262
Alignment:
| Q |
256 |
ttgatggagtatcttgttccgcg---cctccaacttatgagcccccgctagcacgtgaggat |
314 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
50019323 |
ttgatggagtatcttgttctgcgtcgcctccaacttatgagcccccacaagcacatgaggat |
50019262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 5911256 - 5911567
Alignment:
| Q |
11 |
caaagggattcaagaaacaacccagctcaaagggaactaagcgacataaaagtttccttgagtgtcagcccaagaaaagaagtgctcctccaagtaaaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5911256 |
caaagggattcaagaaacaacccagctcaaagggaactaagcgacataaaagtttccttgagcgtcagcccaagaaaagaagtgctcctccaagtaaaca |
5911355 |
T |
|
| Q |
111 |
tgctcaatctagccgtgtcgcacctcaaagaagttcaaaggtatataagtcgatacatagattacttgttttagttttacatgtactttcacttatttta |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5911356 |
cgctcaatctagccgtgtcccacctcaaagaagttcacaggtatataagtcgatacatagattacttgttttagttttacatgtactttcacttatttta |
5911455 |
T |
|
| Q |
211 |
atgttacataatcattttaggttagagaattaacaactaatatggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtga |
310 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5911456 |
atgttgcataatcattttaggttagagaattaacaactaatatggtcaatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgg |
5911555 |
T |
|
| Q |
311 |
ggatatgtttgt |
322 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
5911556 |
gggtatgtttgt |
5911567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 290
Target Start/End: Original strand, 22982245 - 22982407
Alignment:
| Q |
137 |
aaagaagttcaaaggtatataagtcgatacatagattacttgttttagttttacatgtactttcacttattttaatgttacat-----aatcattttagg |
231 |
Q |
| |
|
||||||||||| | ||||||||||||||| || |||||||||||||||||||||||||| || || ||||||| |||||| ||| || || |
|
|
| T |
22982245 |
aaagaagttcacaagtatataagtcgatatgta-attacttgttttagttttacatgtaccttatctatttttaattttacatttacaaattatatttaa |
22982343 |
T |
|
| Q |
232 |
ttag-----agaattaacaactaatatggttgatggagtatcttgttccgcgcctccaacttat |
290 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||||||||||||||||| | |||||||||||| |
|
|
| T |
22982344 |
ttaggagaaagaattaacaactcatatggtcgatggagtatcttgttccacacctccaacttat |
22982407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 73 - 322
Target Start/End: Original strand, 25862562 - 25862811
Alignment:
| Q |
73 |
tgtcagcccaagaaaagaagtgctcctccaagtaaacatgctcaatctagccgtgtcgcacctcaaagaagttcaaaggtatataagtcgatacatagat |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
25862562 |
tgtcagcccaagaaaagaagtgctcctccaagtaaacacgctcaatctagccgtgtcgcacctcaaagaagttcacaggtatataagccgatacatagat |
25862661 |
T |
|
| Q |
173 |
tacttgttttagttttacatgtactttcacttattttaatgttacataatcattttaggttagagaattaacaactaatatggttgatggagtatcttgt |
272 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25862662 |
tacttgttttagttttacatgtattttcacttattttaatgttacataatcattttaggttagagaattaacaactaatatggttgatggagtatcttgt |
25862761 |
T |
|
| Q |
273 |
tccgcgcctccaacttatgagcccccgctagcacgtgaggatatgtttgt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25862762 |
tccgcgcctccaacttatgagcccccgctagcacgtgaggttatgtttgt |
25862811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 86 - 322
Target Start/End: Original strand, 27978921 - 27979156
Alignment:
| Q |
86 |
aaagaagtgctcctccaagtaaacatgctcaatctagccgtgtcgcacctcaaagaagttcaaaggtatataagtcgatacatagattacttgttttagt |
185 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27978921 |
aaagaagtgctcctccaagtaaacacgctcaatctagccgtgtcccacctcaaagaagttcacaggtatataagtcgatacatagattacttgttttagt |
27979020 |
T |
|
| Q |
186 |
tttacatgtactttcacttattttaatgttacataatcattttaggttagagaattaacaactaatatggttgatggagtatcttgttccgcgcctccaa |
285 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27979021 |
tttacatgtactttcac-tattttaatgttgcacgatcattttaggttagagaattaacaactaatatggtcaatggagtatcttgttccgcgcctccaa |
27979119 |
T |
|
| Q |
286 |
cttatgagcccccgctagcacgtgaggatatgtttgt |
322 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27979120 |
cttatgagcccccgctagcacgtgagaatatgtttgt |
27979156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 202 - 314
Target Start/End: Original strand, 48794109 - 48794221
Alignment:
| Q |
202 |
cttattttaatgttacataatcattttaggttagagaattaacaactaatatggttgatggagtatcttgttccgcgcctccaacttatgagcccccgct |
301 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| || ||||||||||||| |||||| | |
|
|
| T |
48794109 |
cttagtttaattttacataatcattttaggttaaagaattaacaagtcatatggttgatggagtatcttgttctgcacctccaacttatgcgcccccaca |
48794208 |
T |
|
| Q |
302 |
agcacgtgaggat |
314 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
48794209 |
agcacatgaggat |
48794221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 38252648 - 38252591
Alignment:
| Q |
254 |
ggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag |
311 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||| | ||||| |||| |
|
|
| T |
38252648 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgag |
38252591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 43156894 - 43156951
Alignment:
| Q |
254 |
ggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag |
311 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||| | ||||| |||| |
|
|
| T |
43156894 |
ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgag |
43156951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 10124060 - 10124003
Alignment:
| Q |
254 |
ggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag |
311 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||| | ||||| |||| |
|
|
| T |
10124060 |
ggttgatggagtatcttgttatgcgcctacaacttatgagcccccacaagcacatgag |
10124003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 19307510 - 19307453
Alignment:
| Q |
254 |
ggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag |
311 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||| | ||||| |||| |
|
|
| T |
19307510 |
ggttgatggagtatcttgttttgcgcctacaacttatgagcccccacaagcacatgag |
19307453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 25382331 - 25382375
Alignment:
| Q |
254 |
ggttgatggagtatcttgttccgcgcctccaacttatgagccccc |
298 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
25382331 |
ggttgatggagtatcttgttctgcgcctacaacttatgatccccc |
25382375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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