View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_high_23 (Length: 324)
Name: NF11701_high_23
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 28228700 - 28229000
Alignment:
| Q |
17 |
atgttttgcatccgaaaacacgtaagtggtcataagaaatattcttacgcaaccaaatcatatctcgtacttcatattgcaaggaaacgcttggtgaaag |
116 |
Q |
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| T |
28228700 |
atgttttgcatccgaaaacacataagtggtcataagaaatattcttacgcaaccaaatcttatctcgtacttcatattgcaaggacacgcttggtgaaag |
28228799 |
T |
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| Q |
117 |
attcaagacatgcacaattgtgctcaatgcttcaccctaaaacgattttggaagatttgtctcgaacaaaaagcatttaaccctttccaccaatgttata |
216 |
Q |
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| T |
28228800 |
attcaagacatgcacaattgtgctcaatgcttcaccctaaaacgattttggaagatttgtctcgaacaaaaagcatttaaccctttccaccaatgttata |
28228899 |
T |
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| Q |
217 |
ttaatgctctcaacaacaccatttaaacatagagacatctgatgtctaatccaattctctctacaataagcataaatttttgtcaaaagtatcctatgct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
28228900 |
ttaatgctctcaacaacaccatttaaacatagagacatctgatgtctaatccaattctctctacaataagcataaatttttgtcaaaagtctcctgtgct |
28228999 |
T |
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| Q |
317 |
t |
317 |
Q |
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| T |
28229000 |
t |
28229000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 50108549 - 50108462
Alignment:
| Q |
200 |
tttccaccaatgttatattaatgctctcaacaacaccatttaaacatagagacatctgatgtctaatccaattctctctacaataagc |
287 |
Q |
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| T |
50108549 |
tttcaaccaatgttctattcatcctctcggtaacaccactcaaacatagagacgtataatgtctaatctaattctctctacaataagc |
50108462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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