View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_high_24 (Length: 323)
Name: NF11701_high_24
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 34502153 - 34501844
Alignment:
| Q |
1 |
tatatggctgcaaatgagaaacgcaaaacaaacccaaactggtcgctgaagttaaaaatgttattaccattgaatacgatcaaaatactttgtttaagaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34502153 |
tatatggctgcaaatgagaaacgcaaaacaaacccaaactggtcgctgaagttaaaaatgttattaccattgaatacgatcaaaatactttgtttaagaa |
34502054 |
T |
|
| Q |
101 |
aggaaacggtacatctggctttggagatgttgaatgatatccctgaggtggacgcctgggaagaatggcttaaacaaacgctctttatgcatgttgccag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34502053 |
aggaaacggtacatctggctttggagatgttgaatgatatccctgaggtggacgcctgggaagaatggcttaaacaaacgctctttatgcatgttgccag |
34501954 |
T |
|
| Q |
201 |
agccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatcaacgtccatcaatatatgttatcaatataatt |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |||||||||| ||||| ||||||| |
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| T |
34501953 |
agccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataatt |
34501854 |
T |
|
| Q |
301 |
attacagcct |
310 |
Q |
| |
|
||||| |||| |
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| T |
34501853 |
attactgcct |
34501844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 5 - 310
Target Start/End: Original strand, 44460532 - 44460840
Alignment:
| Q |
5 |
tggctgcaaatgagaaacgcaaaacaaacccaaactggtcgctgaagttaaaaatgttattaccattgaatacgatcaaaatactttgtttaagaaagga |
104 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||| | |||| |||| |||| || ||||||| ||| || |
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| T |
44460532 |
tggctgcaaatgagagacgcaaaacaaacccaaactggccgctgaagttaagaatgttgttaccacttaatatgatccaaatgctatgtttaaaaaaaga |
44460631 |
T |
|
| Q |
105 |
aacggtacatctggctttggagatgttgaatgatatccc---tgaggtggacgcctgggaagaatggcttaaacaaacgctctttatgcatgttgccaga |
201 |
Q |
| |
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||| |||||| ||||||| ||||||||||||||||||| |||||||||| | ||||| ||| | |||||| | |||||||| |||||| | || |
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| T |
44460632 |
aactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcgga |
44460731 |
T |
|
| Q |
202 |
gccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatcaacgtccatcaatatatgttatcaatataatta |
301 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||| || || ||| |||||||||| ||||| |||||||| |
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| T |
44460732 |
gccttgtgtgggtttaaagatttcgaaacagccaagcagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataatta |
44460831 |
T |
|
| Q |
302 |
ttacagcct |
310 |
Q |
| |
|
|||| |||| |
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|
| T |
44460832 |
ttactgcct |
44460840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 5 - 310
Target Start/End: Original strand, 44468065 - 44468373
Alignment:
| Q |
5 |
tggctgcaaatgagaaacgcaaaacaaacccaaactggtcgctgaagttaaaaatgttattaccattgaatacgatcaaaatactttgtttaagaaagga |
104 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||| | |||| |||| |||| || ||||||| ||| || |
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|
| T |
44468065 |
tggctgcaaatgagagacgcaaaacaaacccaaactggccgctgaagttaagaatgttgttaccacttaatatgatccaaatgctatgtttaaaaaaaga |
44468164 |
T |
|
| Q |
105 |
aacggtacatctggctttggagatgttgaatgatatccc---tgaggtggacgcctgggaagaatggcttaaacaaacgctctttatgcatgttgccaga |
201 |
Q |
| |
|
||| |||||| ||||||| ||||||||||||||||||| |||||||||| | ||||| ||| | |||||| | |||||||| |||||| | || |
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|
| T |
44468165 |
aactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccgggaaaaattgtttaaactcatgctctttacacatgttttcgga |
44468264 |
T |
|
| Q |
202 |
gccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatcaacgtccatcaatatatgttatcaatataatta |
301 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||| || || ||| |||||||||| ||||| |||||||| |
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| T |
44468265 |
gccttgtgtgggtttaaagatttcgaaacagccaagcagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataatta |
44468364 |
T |
|
| Q |
302 |
ttacagcct |
310 |
Q |
| |
|
|||| |||| |
|
|
| T |
44468365 |
ttactgcct |
44468373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 46359402 - 46359545
Alignment:
| Q |
5 |
tggctgcaaatgagaaacgcaaaacaaacccaaactggtcgctgaagttaaaaatgttattaccattgaatacgatcaaaatactttgtttaagaaagga |
104 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| ||| |||||||||||| |||||| |||||| | |||| ||||||||| || ||||||| ||| || |
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| T |
46359402 |
tggctgcaaatgagagacgctaaacaaacccaaattggccgctgaagttaagaatgttgttaccacttaatatgatcaaaatgctatgtttaaaaaaaga |
46359501 |
T |
|
| Q |
105 |
aacggtacatctggctttggagatgttgaatgatatccctgagg |
148 |
Q |
| |
|
||| |||||| ||||||| ||||||||||||||||||| |||| |
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|
| T |
46359502 |
aactgtacatttggctttcaagatgttgaatgatatccccgagg |
46359545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 40180166 - 40180103
Alignment:
| Q |
201 |
agccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagac |
264 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||||||| |||||||| ||||||||||||||||| |
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| T |
40180166 |
agccttgtgtcagtttaaagattttgatgcagccaagcagttgatctttaaaatgattgcagac |
40180103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 38604879 - 38604839
Alignment:
| Q |
5 |
tggctgcaaatgagaaacgcaaaacaaacccaaactggtcg |
45 |
Q |
| |
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|||||||||| |||||||| |||||||| |||||||||||| |
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|
| T |
38604879 |
tggctgcaaaggagaaacggaaaacaaatccaaactggtcg |
38604839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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