View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_high_26 (Length: 317)
Name: NF11701_high_26
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 46455586 - 46455282
Alignment:
| Q |
1 |
tcacatgacaatctttaaaatacaatcatatgccctcaaacaaataaccatttgcggtggtggtttttacctagtgtagttaagccacgttaatagcgat |
100 |
Q |
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| T |
46455586 |
tcacatgacaatcttgaaaatacaatcatatgccctcaaacaaataaccatttggggtggtggtttttacctagtgtagttaagccacgttaatagcgat |
46455487 |
T |
|
| Q |
101 |
aaaactagcttaagatttcttattttttgtctcaaatagcatcctttaacatctacgt-caaacaagttcatgtttgaaaaatgttaacaataacacaca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46455486 |
aaaactagcttaagatttcttattttttgtctcaaatagcatcctttaacatctacgtccaaacaagttcatgtttgaaaaatgttaacaataacacaca |
46455387 |
T |
|
| Q |
200 |
aactattaaaag----nnnnnnnnggtagagtcaaagatgtaaattcacccacatctattcacccttcttttccttatccctaatactcgggtctctatc |
295 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46455386 |
aactattaaaagaaaaaaaaaaaaggtagagtcaaatatgtaaattcacccacatctattcacccttcttttccttatccctaatactcgggtctctatc |
46455287 |
T |
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| Q |
296 |
aattt |
300 |
Q |
| |
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||||| |
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| T |
46455286 |
aattt |
46455282 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 3510982 - 3511023
Alignment:
| Q |
258 |
cccttcttttccttatccctaatactcgggtctctatcaatt |
299 |
Q |
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| T |
3510982 |
cccttcttttccttatccctcttactcgggtctctatcaatt |
3511023 |
T |
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