View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11701_high_33 (Length: 239)

Name: NF11701_high_33
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11701_high_33
NF11701_high_33
[»] chr1 (2 HSPs)
chr1 (1-167)||(4233959-4234126)
chr1 (177-223)||(4234171-4234217)
[»] chr5 (3 HSPs)
chr5 (75-167)||(36513728-36513824)
chr5 (169-223)||(36513626-36513680)
chr5 (29-76)||(36513859-36513906)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 4233959 - 4234126
Alignment:
Q  1 attttatcgtttgtgttgcatccattttaaagaagatttgttatgcgcaca-atgatgatgaaaagtctctgaagaacgtttctgagcaggtatggtctt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4233959 attttatcgtttgtgttgcatccattttaaagaagatttgttatgcgcacatatgatgatgaaaagtctctgaagaacgtttctgagcaggtatggtctt 4234058  T
Q  100 gtatttttattatccatatggtgatcaaaatcagttcttatggttctttaatgttcaacctcgggtaa 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4234059 gtatttttattatccatatggtgatcaaaatcagttcttatggttctttaatgttcaacctcgggtaa 4234126  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 4234171 - 4234217
Alignment:
Q  177 caatggcccccaatatatatattaattttcagttctaacttaatttt 223  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  4234171 caatggcccccaatatatatattaattttcatttctaacttaatttt 4234217  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 36513824 - 36513728
Alignment:
Q  75 aacgtttctgagcaggtatggtcttgtatttttattatccatatggt-----gatcaaaatcagttcttatggttctttaatgttcaacctcgggtaa 167  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||    
T  36513824 aacgtttctga-caggtatggtcttgtatttttattatccatatggtacgttgatcaaaatcagttcttatggttctttaatgttcaacctcgggtaa 36513728  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 36513680 - 36513626
Alignment:
Q  169 atatcaaccaatggcccccaatatatatattaattttcagttctaacttaatttt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36513680 atatcaaccaatggcccccaatatatatattaattttcagttctaacttaatttt 36513626  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 36513906 - 36513859
Alignment:
Q  29 aaagaagatttgttatgcgcacaatgatgatgaaaagtctctgaagaa 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36513906 aaagaagatttgttatgcgcacaatgatgatgaaaagtctctgaagaa 36513859  T

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