View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_high_34 (Length: 238)
Name: NF11701_high_34
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 46770557 - 46770779
Alignment:
| Q |
1 |
aatcacaacttgaggtgtggattgctaaaagagattttcattgatattaattgcaggacggaaaagttttacaagagggtcctgtttcccctctttatac |
100 |
Q |
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| T |
46770557 |
aatcacaacttgaggtgtggattgctaaaagagactttcattggtattaattgcaggacggaaaagttttacaagagggtcctgtttcccctctctatac |
46770656 |
T |
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| Q |
101 |
cgcgaaggtaataagtctgcttacctttgttttctgtttctttttactgttccctttcttctatcttgagatgctttcttataggattcattggccgttt |
200 |
Q |
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| T |
46770657 |
cgcgaaggtaataagtctgcttacctttgttttctgtttctttttactgttccctttcttctatcttgagatgctttcttataggattcattggccgttt |
46770756 |
T |
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| Q |
201 |
aattgatgtatcagtgaggtttg |
223 |
Q |
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| T |
46770757 |
aattgatgtatcagtgaggtttg |
46770779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 46762865 - 46762907
Alignment:
| Q |
175 |
tttcttataggattcattggccgtttaattgatgtatcagtga |
217 |
Q |
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| T |
46762865 |
tttcttatatgattcattggccatttaattgatgtatcagtga |
46762907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 46762702 - 46762777
Alignment:
| Q |
89 |
ccctctttataccgcgaaggtaataagtctgcttacctttgttttctgtttctttttactgttccctttcttctat |
164 |
Q |
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| T |
46762702 |
ccctctctataccgtgaaggcaataaatcttattatcttcgttttctgcttctatttactgttctctttcttctat |
46762777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42806336 - 42806376
Alignment:
| Q |
1 |
aatcacaacttgaggtgtggattgctaaaagagattttcat |
41 |
Q |
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| T |
42806336 |
aatcacaccttgaggtgtggattgctaaaagacactttcat |
42806376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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