View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11701_high_38 (Length: 221)

Name: NF11701_high_38
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11701_high_38
NF11701_high_38
[»] chr7 (13 HSPs)
chr7 (57-176)||(19850672-19850792)
chr7 (16-53)||(32205075-32205112)
chr7 (16-48)||(48374584-48374616)
chr7 (16-53)||(27888278-27888315)
chr7 (16-53)||(48374433-48374470)
chr7 (16-52)||(11824218-11824254)
chr7 (16-48)||(14795132-14795164)
chr7 (16-48)||(15242124-15242156)
chr7 (16-48)||(27949422-27949454)
chr7 (16-48)||(31731404-31731436)
chr7 (20-48)||(33008105-33008133)
chr7 (16-48)||(42863581-42863613)
chr7 (16-48)||(46517294-46517326)
[»] chr8 (6 HSPs)
chr8 (16-54)||(16983543-16983581)
chr8 (16-53)||(1961407-1961444)
chr8 (16-53)||(43506534-43506571)
chr8 (16-48)||(13407322-13407354)
chr8 (16-48)||(31691658-31691690)
chr8 (16-48)||(34952462-34952494)
[»] chr3 (11 HSPs)
chr3 (16-53)||(46160945-46160982)
chr3 (16-52)||(5452057-5452093)
chr3 (16-48)||(46450068-46450100)
chr3 (16-54)||(20493592-20493630)
chr3 (16-54)||(24734854-24734892)
chr3 (16-53)||(41451889-41451926)
chr3 (16-49)||(52123954-52123987)
chr3 (15-48)||(55452159-55452192)
chr3 (16-48)||(5452207-5452239)
chr3 (16-48)||(28529254-28529286)
chr3 (16-48)||(30624634-30624666)
[»] chr4 (9 HSPs)
chr4 (16-52)||(8109105-8109141)
chr4 (16-48)||(20225486-20225518)
chr4 (16-53)||(19447281-19447318)
chr4 (16-53)||(26361302-26361339)
chr4 (18-55)||(26361449-26361486)
chr4 (16-53)||(40991736-40991773)
chr4 (16-48)||(8108957-8108989)
chr4 (16-52)||(20225350-20225386)
chr4 (16-48)||(43771127-43771159)
[»] chr1 (6 HSPs)
chr1 (16-55)||(13889293-13889332)
chr1 (19-53)||(28218040-28218074)
chr1 (16-53)||(25543336-25543373)
chr1 (16-48)||(3872780-3872812)
chr1 (16-52)||(8899163-8899199)
chr1 (16-48)||(11851925-11851957)
[»] chr6 (2 HSPs)
chr6 (18-48)||(12753909-12753939)
chr6 (21-53)||(1392781-1392813)
[»] chr2 (5 HSPs)
chr2 (18-48)||(33678264-33678294)
chr2 (16-48)||(12989192-12989224)
chr2 (16-48)||(32856286-32856318)
chr2 (17-53)||(43400284-43400320)
chr2 (16-48)||(45554568-45554600)
[»] chr5 (2 HSPs)
chr5 (16-52)||(10300052-10300088)
chr5 (21-53)||(37455506-37455538)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 57 - 176
Target Start/End: Original strand, 19850672 - 19850792
Alignment:
Q  57 ataaaatacactgcaaatcaggaataccaatgcatgataagtttacaaaaggttaataaaaagtattgacctctgtc-ggcattggaagaccatacacca 155  Q
    |||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||  | ||| ||||||||||||||||||||||    
T  19850672 ataaaataaactgcaaatcagcaataccaatgcatgataagtgtacaaaaggttaattaaaagtgttgacagcagtcgggcattggaagaccatacacca 19850771  T
Q  156 gtgttcaagagtaatgactaa 176  Q
    ||||| |||||||||||||||    
T  19850772 gtgttgaagagtaatgactaa 19850792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 32205112 - 32205075
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactct 53  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  32205112 agagagtgttcaaaagtgagtgttgctagcattcctct 32205075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 48374584 - 48374616
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||||||||||||||||||||||||||    
T  48374584 agagagtgttcaaaagtgagtgttgctagcatt 48374616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 27888315 - 27888278
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactct 53  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  27888315 agagagtgctcaaaagtgagtgttgctagcattcctct 27888278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 48374470 - 48374433
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactct 53  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  48374470 agagagtgttcaaaagagagtgttgctagcactactct 48374433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 11824218 - 11824254
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactc 52  Q
    |||||||||||||||| |||||||| |||||||||||    
T  11824218 agagagtgttcaaaagagagtgttgttagcattactc 11824254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 14795164 - 14795132
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||| ||||||||||||||||||||||    
T  14795164 agagagtgttgaaaagtgagtgttgctagcatt 14795132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 15242156 - 15242124
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||| ||||||||||||||||||||||    
T  15242156 agagagtgttgaaaagtgagtgttgctagcatt 15242124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 27949422 - 27949454
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||||||||| ||||||||||||||||    
T  27949422 agagagtgttcaaaagagagtgttgctagcatt 27949454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 31731404 - 31731436
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||||||||||||||||||||| ||||    
T  31731404 agagagtgttcaaaagtgagtgttgctaacatt 31731436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 33008133 - 33008105
Alignment:
Q  20 agtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||||||||||||||||||||||    
T  33008133 agtgttcaaaagtgagtgttgctagcatt 33008105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 42863581 - 42863613
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||| ||||||||||||||||||||||    
T  42863581 agagagtgtttaaaagtgagtgttgctagcatt 42863613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 46517326 - 46517294
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||| ||||||||||||||||||||||    
T  46517326 agagagtgttaaaaagtgagtgttgctagcatt 46517294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 16983543 - 16983581
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactcta 54  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  16983543 agagagtgttcaaaagagagtgttgctagcattactcta 16983581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 1961407 - 1961444
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactct 53  Q
    |||||||||||||||| |||||||||||||||||||||    
T  1961407 agagagtgttcaaaagagagtgttgctagcattactct 1961444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 43506571 - 43506534
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactct 53  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  43506571 agagagtgttcaaaagtgagtgttgctagcattcctct 43506534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 13407354 - 13407322
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||||||||| ||||||||||||||||    
T  13407354 agagagtgttcaaaagagagtgttgctagcatt 13407322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 31691658 - 31691690
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    ||||||| |||||||||||||||||||||||||    
T  31691658 agagagttttcaaaagtgagtgttgctagcatt 31691690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 34952494 - 34952462
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||| ||||||||||||||||||||||    
T  34952494 agagagtgttaaaaagtgagtgttgctagcatt 34952462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 46160982 - 46160945
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactct 53  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  46160982 agagagtgttcaaaagtgagtgttgctagcattcctct 46160945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 5452093 - 5452057
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactc 52  Q
    |||||||||||||||| ||||||||||||||||||||    
T  5452093 agagagtgttcaaaagagagtgttgctagcattactc 5452057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 46450100 - 46450068
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||||||||||||||||||||||||||    
T  46450100 agagagtgttcaaaagtgagtgttgctagcatt 46450068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 20493592 - 20493630
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactcta 54  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  20493592 agagagtgttgaaaagtgagtgttgctagcattcctcta 20493630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 24734854 - 24734892
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactcta 54  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  24734854 agagagtgttcaaaagagagtgttgctagcattgctcta 24734892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 41451926 - 41451889
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactct 53  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  41451926 agagagtgttcaaaagagagtgttgctagcattgctct 41451889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 52123987 - 52123954
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatta 49  Q
    |||||||||||||||| |||||||||||||||||    
T  52123987 agagagtgttcaaaagagagtgttgctagcatta 52123954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 55452159 - 55452192
Alignment:
Q  15 cagagagtgttcaaaagtgagtgttgctagcatt 48  Q
    ||||||||||||||||||||||||||||| ||||    
T  55452159 cagagagtgttcaaaagtgagtgttgctaacatt 55452192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 5452207 - 5452239
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||| ||||||||||||||||||||||    
T  5452207 agagagtgttgaaaagtgagtgttgctagcatt 5452239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 28529286 - 28529254
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||| ||||||||||||||||||||||    
T  28529286 agagagtgttgaaaagtgagtgttgctagcatt 28529254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 30624666 - 30624634
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||| ||||||||||||||||||||||||    
T  30624666 agagagtgctcaaaagtgagtgttgctagcatt 30624634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 8109105 - 8109141
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactc 52  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8109105 agagagtgttcaaaagagagtgttgctagcattactc 8109141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 20225486 - 20225518
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||||||||||||||||||||||||||    
T  20225486 agagagtgttcaaaagtgagtgttgctagcatt 20225518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 19447281 - 19447318
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactct 53  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  19447281 agagagtgttcaaaagagagtgttgctagcactactct 19447318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 26361339 - 26361302
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactct 53  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  26361339 agagggtgttcaaaagagagtgttgctagcattactct 26361302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 26361449 - 26361486
Alignment:
Q  18 agagtgttcaaaagtgagtgttgctagcattactctaa 55  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  26361449 agagtgttgaaaagtgagtgttgctagcattcctctaa 26361486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 40991736 - 40991773
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactct 53  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  40991736 agagagtgttgaaaagtgagtgttgctagcattcctct 40991773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 8108989 - 8108957
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||| ||||||||||||||||||||||    
T  8108989 agagagtgttgaaaagtgagtgttgctagcatt 8108957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 20225386 - 20225350
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactc 52  Q
    |||||||||||||||| |||||||||||||| |||||    
T  20225386 agagagtgttcaaaagagagtgttgctagcactactc 20225350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 43771159 - 43771127
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||||||||||||||||||||| ||||    
T  43771159 agagagtgttcaaaagtgagtgttgctaccatt 43771127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 13889293 - 13889332
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactctaa 55  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  13889293 agagagtgttcaaaagagagtgttgctagcattcctctaa 13889332  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 28218074 - 28218040
Alignment:
Q  19 gagtgttcaaaagtgagtgttgctagcattactct 53  Q
    ||||||||||||| |||||||||||||||||||||    
T  28218074 gagtgttcaaaagagagtgttgctagcattactct 28218040  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 25543373 - 25543336
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactct 53  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  25543373 agagagtgtttaaaagtgagtgttgctagcattcctct 25543336  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 3872780 - 3872812
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||| ||||||||||||||||||||||    
T  3872780 agagagtgttgaaaagtgagtgttgctagcatt 3872812  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 8899163 - 8899199
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactc 52  Q
    |||||||||||||||| || |||||||||||||||||    
T  8899163 agagagtgttcaaaagagattgttgctagcattactc 8899199  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 11851957 - 11851925
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    ||||||||||||||||||| |||||||||||||    
T  11851957 agagagtgttcaaaagtgaatgttgctagcatt 11851925  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 12753909 - 12753939
Alignment:
Q  18 agagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||||||||||||||||||||||||    
T  12753909 agagtgttcaaaagtgagtgttgctagcatt 12753939  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 1392781 - 1392813
Alignment:
Q  21 gtgttcaaaagtgagtgttgctagcattactct 53  Q
    ||||||||||| |||||||||||||||||||||    
T  1392781 gtgttcaaaagagagtgttgctagcattactct 1392813  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 33678264 - 33678294
Alignment:
Q  18 agagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||||||||||||||||||||||||    
T  33678264 agagtgttcaaaagtgagtgttgctagcatt 33678294  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 12989224 - 12989192
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||| ||||||||||||||||||||||    
T  12989224 agagagtgttgaaaagtgagtgttgctagcatt 12989192  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 32856286 - 32856318
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    ||||||||||||||||||||||||| |||||||    
T  32856286 agagagtgttcaaaagtgagtgttgttagcatt 32856318  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 43400284 - 43400320
Alignment:
Q  17 gagagtgttcaaaagtgagtgttgctagcattactct 53  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  43400284 gagagtgttgaaaagagagtgttgctagcattactct 43400320  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 45554600 - 45554568
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcatt 48  Q
    |||||||||| ||||||||||||||||||||||    
T  45554600 agagagtgttgaaaagtgagtgttgctagcatt 45554568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 10300052 - 10300088
Alignment:
Q  16 agagagtgttcaaaagtgagtgttgctagcattactc 52  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  10300052 agagagtgttgaaaagagagtgttgctagcattactc 10300088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 37455506 - 37455538
Alignment:
Q  21 gtgttcaaaagtgagtgttgctagcattactct 53  Q
    ||||||||||| |||||||||||||||||||||    
T  37455506 gtgttcaaaagagagtgttgctagcattactct 37455538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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