View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_high_39 (Length: 214)
Name: NF11701_high_39
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_high_39 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 20842871 - 20842658
Alignment:
| Q |
1 |
cttcaagaacagcttcagaacatctcaaacgtggaacatgttctaattttaacaattctggtttgttgttaaaatctgaacccggttcagttccggtttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20842871 |
cttcaagaacagcttcagaacatctcaaacgtggaacatgctctaattttaacaattctggtttgttgttaaaatctgaacccggttcagttccggtttc |
20842772 |
T |
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| Q |
101 |
tccggttcctatttcgtcggtctccggttcaaaccggaaaagagatcaaatgggagttgctgtttcagtttcaacttcaccatcatcattaagttttcag |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20842771 |
tccggttcctatttcgtcggtctccggttcgaaccggaaaagagatcaaatgggagttgctgtttcagtttcaacttcaccatcatcattaagttttcag |
20842672 |
T |
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| Q |
201 |
aatcataacttggc |
214 |
Q |
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|||||||||||||| |
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| T |
20842671 |
aatcataacttggc |
20842658 |
T |
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