View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11701_high_5 (Length: 517)
Name: NF11701_high_5
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 6 - 501
Target Start/End: Original strand, 26056775 - 26057279
Alignment:
| Q |
6 |
tgcaattatacatgaaggtctttaattttaatcatcatattttcaactgctatggagattcacagtgggggctttacgactattgagttgattctattag |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26056775 |
tgcaattatacttgaaggtctttaattttaatcaccatattttcaactgttatggagattcacagtgggggctttacgactattgagttgattctattag |
26056874 |
T |
|
| Q |
106 |
agtagtctttacgactatttctgcaagatattgaactatcgtctgtatttttaatacgaactatcgaattatatggttcattaaacctagtattacggga |
205 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
26056875 |
aatagtctttacgactatttctgcaagatatcgaactatcgtctgaatttttaatacgagctatcgaattctatggttcattaaacctagtattatggga |
26056974 |
T |
|
| Q |
206 |
attttaaaatcagttgagtgacactnnnnnnnctaacacgatattgtaaggtgacatctacattttaaaatgtgttttgatgcatg----ttacttaacg |
301 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26056975 |
attttaaaatcagttgagtgacactaaaaaaactaacacgatattgtaagatgacatctacattttaaaatgtgttttgatgcatgttacttacttaacg |
26057074 |
T |
|
| Q |
302 |
ccatctataccatactattcccatactcatactgctagtattactcctata-----nnnnnnnnnnnnnnnngaaatagaaactagctccatatttactt |
396 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
26057075 |
ccatctataccatgctattcccatactcatactgctagtattactcatatattttttattttttatttttttgaaatagaaactagctgcatatttactt |
26057174 |
T |
|
| Q |
397 |
ttgcattatcgtcaactactagcatgtgaaaattcatgagcatgatgaattattaaaagatatatatgtccaaaaattctttccaaaagcagtcagtatg |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
26057175 |
ttgcattatcgtcaactactagcatgtgaaaattcatgagcatgatgaattattaaaagatatatatgtccataaattctttccaaaggcagtcagtatg |
26057274 |
T |
|
| Q |
497 |
aaatt |
501 |
Q |
| |
|
||||| |
|
|
| T |
26057275 |
aaatt |
26057279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 6 - 501
Target Start/End: Original strand, 26113425 - 26113920
Alignment:
| Q |
6 |
tgcaattatacatgaaggtctttaattttaatcatcatattttcaactgctatggagattcacagtgggggctttacgactattgagttgattctattag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26113425 |
tgcaattatacatgaaggtctttaattttaatcaccatattttcaactgttatggagattcacagtgggggctttacgactattgagttgattctattag |
26113524 |
T |
|
| Q |
106 |
agtagtctttacgactatttctgcaagatattgaactatcgtctgtatttttaatacgaactatcgaattatatggttcattaaacctagtattacggga |
205 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
26113525 |
aaaagtctttacgactatttctgcaagatatcgaactatcgtctgaatttttaatacgagctatcgaattctatggttcattaaacctagtattatggga |
26113624 |
T |
|
| Q |
206 |
attttaaaatcagttgagtgacact-nnnnnnnctaacacgatattgtaaggtgacatctacattttaaaatgtgttttgatgcatgttacttaacgcca |
304 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26113625 |
attttaaaatcagtcgagtgacactaaaaaaaactaacacgatattgtaaggtgacatctgcattttaaaatgtgttttgatgcatgttacttaacgcca |
26113724 |
T |
|
| Q |
305 |
tctataccatactattcccatactcatactgctagtattactcctatannnnnnnnnnnnnnnngaaatagaaactagctccatatttacttttgcatta |
404 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26113725 |
tctataccatgctattcccatactcatattgctagtattactcaaata-tttttttatttttttgaaatagaaactagctacatatttacttttgcatta |
26113823 |
T |
|
| Q |
405 |
tcgtcaactactagcatgtgaaaattcatgagcatgatgaattattaaaagatatatatgtccaaaaattctttccaaaagcagtcagtatgaaatt |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26113824 |
tcgtcaactactagcatgtgaaaattcatgagcatgatgaattattaaatgatagatatgtccaaaaattctttccaaaggcagtcagtatgaaatt |
26113920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 392 - 501
Target Start/End: Original strand, 26080769 - 26080885
Alignment:
| Q |
392 |
tacttttgcattatcgtcaactactagcatgtgaaaattcatga-gcatgatgaattattaaa------agatatatatgtccaaaaattctttccaaaa |
484 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||| | |||||||| || ||||||| |||||||| |
|
|
| T |
26080769 |
tacttttgcattattgtcaactactagcatgtgaaaaatcatgatgcatgatgaattattaaatgatatatatatatatatctaaaaattatttccaaag |
26080868 |
T |
|
| Q |
485 |
gcagtcagtatgaaatt |
501 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26080869 |
gcagtcagtatgaaatt |
26080885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 379 - 453
Target Start/End: Original strand, 26090613 - 26090688
Alignment:
| Q |
379 |
ctagctccatatttacttttgcattatcgtcaactactagcatgtgaaaattcatga-gcatgatgaattattaaa |
453 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
26090613 |
ctagctgcatatttacttttgcattattgtcaactactagcatgtgaaaattcacgaggcatgatgaattattaaa |
26090688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 26090494 - 26090555
Alignment:
| Q |
167 |
tatcgaattatatggttcattaaacctagtattacgggaattttaaaatcagttgagtgaca |
228 |
Q |
| |
|
||||||| | |||||||||| || ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26090494 |
tatcgaactctatggttcataaatcctagtattacgggaattttaaaatcatttgagtgaca |
26090555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 501
Target Start/End: Original strand, 26091442 - 26091494
Alignment:
| Q |
449 |
ttaaaagatatatatgtccaaaaattctttccaaaagcagtcagtatgaaatt |
501 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||| |||||||||||||||| |
|
|
| T |
26091442 |
ttaaaggatatatatgtctaaaaattatttccaaagacagtcagtatgaaatt |
26091494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University