View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11701_high_6 (Length: 499)

Name: NF11701_high_6
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11701_high_6
NF11701_high_6
[»] chr4 (3 HSPs)
chr4 (36-499)||(52351968-52352443)
chr4 (197-499)||(13616780-13617080)
chr4 (164-499)||(20296204-20296538)
[»] chr5 (16 HSPs)
chr5 (164-499)||(30521247-30521581)
chr5 (164-499)||(30561587-30561921)
chr5 (164-499)||(29853461-29853795)
chr5 (164-499)||(30435966-30436300)
chr5 (121-498)||(30475470-30475858)
chr5 (164-499)||(29872324-29872658)
chr5 (164-499)||(30206672-30207006)
chr5 (166-497)||(17983059-17983389)
chr5 (164-499)||(30713047-30713381)
chr5 (164-498)||(30749793-30750126)
chr5 (164-499)||(30338147-30338478)
chr5 (164-499)||(30483554-30483885)
chr5 (164-498)||(30060519-30060852)
chr5 (164-499)||(30400224-30400558)
chr5 (164-438)||(30242058-30242328)
chr5 (164-245)||(30677043-30677124)
[»] chr1 (2 HSPs)
chr1 (166-499)||(7581341-7581673)
chr1 (166-447)||(7099573-7099853)
[»] chr7 (1 HSPs)
chr7 (165-499)||(26707486-26707816)
[»] chr3 (1 HSPs)
chr3 (217-499)||(25293546-25293827)


Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 36 - 499
Target Start/End: Original strand, 52351968 - 52352443
Alignment:
Q  36 ttgtttgaaggcaacctcaatgactgatgaaaaataagtatgatggacactaatatggtgtgtgcaccttgacaaatcatggtttgtattctccataatc 135  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351968 ttgtttgaaggcaacctcattgactgatgaaaaataagtatgatggacactaatatggtgtgtgcaccttgacaaatcatggtttgtattctccataatc 52352067  T
Q  136 atacactctggccccacaattgattgagcaag------------atcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaa 223  Q
    ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52352068 atacactctggccccacaattgattgagcaagatcatgtacaagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaa 52352167  T
Q  224 agaatgacttttggtacaattcagtccaaatcatattgccaacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagat 323  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52352168 agaatgacttttggtacaattcattccaaatcatattgccaacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagat 52352267  T
Q  324 gaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacct 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52352268 gaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacattgttttaaggttgacgttaaatggaaataactcaacct 52352367  T
Q  424 caaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttct 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52352368 caaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttct 52352443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 197 - 499
Target Start/End: Original strand, 13616780 - 13617080
Alignment:
Q  197 aataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgccaacttctttctacctccaaattttccttagacg 296  Q
    |||||||||| || | |||||||||||| || || ||||||||||||||| |||||||||| || ||||| || ||| |||||||| ||||  ||| | |    
T  13616780 aataatcattcatatggatgtcttgaaaaaaagatttttggtacaattcattccaaatcatgtttccaacatc-ttcaacctccaatttttttttacatg 13616878  T
Q  297 aaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggt 396  Q
    |||||||| |||| |||||||| ||||||||||| || || |||  |||||  |||||||| |||||||   ||||||||| ||| | |||||| |||||    
T  13616879 aaataaattcattagccatccaaagatgaatcaattcttcctttgtgatttttgtatctttaggaaatacaacacagaaagcgaatcattgtttaaaggt 13616978  T
Q  397 tgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttt 496  Q
    || || ||||| ||| ||||||| ||||||  |||| ||||||||||||||||    ||||  |||||||| ||||||| ||||||||  ||||||||||    
T  13616979 tggcgataaat-gaagtaactcagcctcaaatcaggaaaaatagaattctcataccgtaaatcccaaagctcgctctctctaatttcacaccattccttt 13617077  T
Q  497 tct 499  Q
    |||    
T  13617078 tct 13617080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 164 - 499
Target Start/End: Complemental strand, 20296538 - 20296204
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    |||||||||||||||||||| |||| ||||   |||| ||||  || ||||| |||||||||||||| ||||||||||||||  |||||| ||| || ||    
T  20296538 caagatcatgcatcttgaaataaatatctctagaatattcatctattttgatttcttgaaagaatgatttttggtacaattccttccaaaccatgtttcc 20296439  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| | || ||||||||  || |||| ||||| |||||||| |||||||| || |||||||| || ||||| | ||||||  |||| || |||||    
T  20296438 aacatctt-caacgtccaaattacccatagatgaaattaatccattagccatccaaagctgaatcaattcttctttcaagatttctctatccttaggaaa 20296340  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
    ||| ||||| |||||||||| ||| ||||  ||||  |||||||  || ||||||| |||||| |||||||||||||| || || | || ||||| ||||    
T  20296339 tatagcacaaaaagagaaacattgctttagagttggtgttaaataaaagtaactcagcctcaaagcaggcaaaatagatttttcttgtggtaaagcccaa 20296240  T
Q  464 agcttgctctctttaatttcaacccattccttttct 499  Q
    || |   | |||||||| |||  |||||||||||||    
T  20296239 aggtcattgtctttaatatcacgccattccttttct 20296204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 6e-66; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 164 - 499
Target Start/End: Complemental strand, 30521581 - 30521247
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    |||||||||||| ||||||||||||| ||||| ||| |||    |||||||| ||||| || |||||||||||| |||||||| ||||||||||||| ||    
T  30521581 caagatcatgcaacttgaaagaaatgcctcctgaatcatcgaccatcttgatttcttggaaaaatgacttttggcacaattcattccaaatcatatttcc 30521482  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| ||||||| ||||||||| | || || |||||||| ||||| |||||||||||||| |||||  | || | ||||||  |||||||||||||    
T  30521481 aacatctt-ctacctctaaattttcccttgatgatataaatccgttggcgatccagagatgaattaaatctcccttcatgatttctatatctttgggaaa 30521383  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
     |||||||| |||| ||||| ||||||||||||||   ||||||| || || |||||||| || ||||||||||||||||||||||  | ||||||||||    
T  30521382 catggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaattctcattcggtaaagaccaa 30521283  T
Q  464 agcttgctctctttaatttcaacccattccttttct 499  Q
    | | |||| ||||||||||||| |||||| ||||||    
T  30521282 atcctgctatctttaatttcaagccattctttttct 30521247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 164 - 499
Target Start/End: Complemental strand, 30561921 - 30561587
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    |||||||||||| ||||||||||||| ||||| ||| |||    |||||||| ||||| || |||||||||||| |||||||| ||||||||||||| ||    
T  30561921 caagatcatgcaacttgaaagaaatgcctcctgaatcatcgaccatcttgatttcttggaaaaatgacttttggcacaattcattccaaatcatatttcc 30561822  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| ||||||| ||||||||| | || || |||||||| ||||| |||||||||||||| |||||  | || | ||||||  |||||||||||||    
T  30561821 aacatctt-ctacctctaaattttcccttgatgatataaatccgttggcgatccagagatgaattaaatctcccttcatgatttctatatctttgggaaa 30561723  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
     |||||||| |||| ||||| ||||||||||||||   ||||||| || || |||||||| || ||||||||||||||||||||||  | ||||||||||    
T  30561722 catggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaattctcattcggtaaagaccaa 30561623  T
Q  464 agcttgctctctttaatttcaacccattccttttct 499  Q
    | | |||| ||||||||||||| |||||| ||||||    
T  30561622 atcctgctatctttaatttcaagccattctttttct 30561587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 164 - 499
Target Start/End: Original strand, 29853461 - 29853795
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    |||||||||||||||||||| ||||||||||  | || ||||  |||||||| |||||||||||||||||||||||||||||  |||||| |||||| ||    
T  29853461 caagatcatgcatcttgaaaaaaatgtctccagagtattcatccatcttgatatcttgaaagaatgacttttggtacaattccttccaaaccatatttcc 29853560  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| | || ||||||||  ||||||| |||||||||||||| |||||||| || |||||||| || ||||| ||||||||   ||| ||||||||    
T  29853561 aacatctt-caacgtccaaattacccttagatgaaataaatccattagccatccaaagttgaatcaattcttctttcaggatttctccatccttgggaaa 29853659  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
    ||| || || || ||||||| |||||||| |||||  |||||||  || |||||||||||||| ||| ||||||||||||| || | || ||||| ||||    
T  29853660 tatagcgcaaaaggagaaacattgttttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgtggtaaagcccaa 29853759  T
Q  464 agcttgctctctttaatttcaacccattccttttct 499  Q
    ||||  || |||||||| |||| |||||||||||||    
T  29853760 agctcactgtctttaatatcaagccattccttttct 29853795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 164 - 499
Target Start/End: Original strand, 30435966 - 30436300
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    ||||||||||||||||||||||||||||||| ||||| ||||  |||||| | |||||||||||||| ||||||||||||||  |||||| ||| || ||    
T  30435966 caagatcatgcatcttgaaagaaatgtctccaaaatattcatccatcttgctatcttgaaagaatgatttttggtacaattccttccaaaccatttttcc 30436065  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| | || ||||||||  || |||| ||||||||| |||| |||||||| ||  ||||||| || ||||||||||||||  |||| ||||||||    
T  30436066 aacatctt-caacgtccaaattacccatagatgaaataaattcattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaa 30436164  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
    ||| ||||| |||||||||| ||| |||| |||||  |||||||  || |||||||| ||||| || |||||||||||||| || | || ||||| ||||    
T  30436165 tatagcacaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaatctcaaagcgggcaaaatagaattttcttgtggtaaagcccaa 30436264  T
Q  464 agcttgctctctttaatttcaacccattccttttct 499  Q
    ||||  || |||||||| |||| |||||||||||||    
T  30436265 agctcactgtctttaatatcaagccattccttttct 30436300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 121 - 498
Target Start/End: Original strand, 30475470 - 30475858
Alignment:
Q  121 gtattctccataatcatacactctggccccacaattgattgagcaagatcatgca------------tcttgaaagaaatgtctcctaaataatcattga 208  Q
    |||||||||| |||||||||||||| ||||| || ||||||||||||||||||||            ||||||||| |||||||||| |||||||||  |    
T  30475470 gtattctccaaaatcatacactctgaccccataactgattgagcaagatcatgcactaggtcatgcatcttgaaagtaatgtctcctgaataatcatcta 30475569  T
Q  209 tcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgccaacttctttctacctccaaattttccttagacgaaataaatccat 308  Q
    ||||||||||||| |||||||| |||||| ||| |||  ||||||||||||||||||    || |||| ||||||||  |||| ||  ||||||||||||    
T  30475570 tcttgatgtcttggaagaatgatttttggcacagttccttccaaatcatattgccaaaaaatt-ctacatccaaattagcctttgagaaaataaatccat 30475668  T
Q  309 tggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatg 408  Q
    || ||||||| |||||||||||||| || ||||  |||||| |||||||||||||||| ||||| ||||  ||||   | |||||||| |  ||||||||    
T  30475669 tgcccatccatagatgaatcaaatcttcctttacaatttccatatctttgggaaatatcgcacaaaaagcaaaacaccgctttaaggtcggtgttaaatg 30475768  T
Q  409 gaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttc 498  Q
     || || || ||||||||||| |||||||| |||||||||| || ||| | ||| || || || ||||||||||||| |||||| |||||    
T  30475769 aaagtagcttaacctcaaggctggcaaaatggaattctcatatggtaaggtccagagattactgtctttaatttcaagccattcattttc 30475858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 164 - 499
Target Start/End: Original strand, 29872324 - 29872658
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    |||||||||||||||||||||||||||||||  |||| ||||  ||||||   |||||||||||||| ||||||||||||||  |||||| ||| || ||    
T  29872324 caagatcatgcatcttgaaagaaatgtctccagaatattcatccatcttgccatcttgaaagaatgatttttggtacaattccttccaaaccatgtttcc 29872423  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| | || ||||||||  || |||| ||||||||| |||| |||||||| || |||||||| || ||||| |||||||   |||| ||||||||    
T  29872424 aacatctt-caacgtccaaattacccatagatgaaataaattcattagccatccaaagttgaatcaattcttctttcaggatttttctatccttgggaaa 29872522  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
    ||| || || |||||||||| ||| |||| |||||  |||||||  || |||||||||||||| ||| ||||||||||||| || |  ||||||| ||||    
T  29872523 tatagcgcaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgcgataaagcccaa 29872622  T
Q  464 agcttgctctctttaatttcaacccattccttttct 499  Q
    ||||  || || ||||| |||| |||||||||||||    
T  29872623 agctcactgtccttaatatcaagccattccttttct 29872658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 164 - 499
Target Start/End: Original strand, 30206672 - 30207006
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    |||||||||||||||||||||||||||||||  ||   |  |  |||||||||||||||||||| || |||||| |||||||| |||||| |||  ||||    
T  30206672 caagatcatgcatcttgaaagaaatgtctccagaaccgttgtccatcttgatgtcttgaaagaaagatttttggcacaattcattccaaaccatgctgcc 30206771  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| | ||||||| ||||||| ||||  |||||||| |||| |||||||| ||||||||||| || ||  | | || ||| ||||||||||||||    
T  30206772 aacatctt-caacctccatattttccctagataaaataaattcattagccatccaaagatgaatcaattcttccctcacgaattctgtatctttgggaaa 30206870  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
     || ||||| |||| |||||   | ||||||||||  |||||||| || || ||||||||||| ||||| |||||| ||||||||| || ||||| ||||    
T  30206871 catagcacaaaaagcgaaacaccgctttaaggttggagttaaatgaaagtagctcaacctcaaagcaggtaaaatataattctcatgtggtaaagcccaa 30206970  T
Q  464 agcttgctctctttaatttcaacccattccttttct 499  Q
    || |  |||||||||||||||| |||||| ||||||    
T  30206971 agttcactctctttaatttcaagccattctttttct 30207006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 166 - 497
Target Start/End: Original strand, 17983059 - 17983389
Alignment:
Q  166 agatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgccaa 265  Q
    ||||| ||||| |||||||||||  | | | |||||||||  || | ||||||||||||||| || ||||||||||||||| |||||||||| |||||||    
T  17983059 agatcgtgcattttgaaagaaatcacacttgaataatcatcaatatggatgtcttgaaagaaagatttttggtacaattcattccaaatcatgttgccaa 17983158  T
Q  266 cttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaata 365  Q
    | |||| | |||||||||||||   |||| || ||||||  ||| |||||||| |||||||| |  || ||||| | |||||| |  |||||||||||||    
T  17983159 catctt-caacctccaaattttttctagatgagataaatttattagccatccaaagatgaattagttcttctttcatgatttctgcttctttgggaaata 17983257  T
Q  366 tggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaaag 465  Q
    | ||||| |||| ||||| ||||||||||||||  | |||||| || || |||||||| |  || || ||||||||||||||||  | ||||| ||| ||    
T  17983258 tagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaaccttagagctgggaaaatagaattctcatgcggtaaagcccagag 17983357  T
Q  466 cttgctctctttaatttcaacccattcctttt 497  Q
    || ||||||||||||||||| |||||||||||    
T  17983358 ctcgctctctttaatttcaaaccattcctttt 17983389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 164 - 499
Target Start/End: Complemental strand, 30713381 - 30713047
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    ||||||||||||| || |||||||||| |||  |||| ||||  ||||||   ||||| |||||||| ||||||||||||||  |||||| ||| || ||    
T  30713381 caagatcatgcattttaaaagaaatgtttccagaatattcatccatcttgcaatcttggaagaatgatttttggtacaattccttccaaaccatgtttcc 30713282  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| | || ||||||||  || |||| |||||||||||||| |||||||| ||  ||||||| || ||||||||||||||  |||| ||||||||    
T  30713281 aacatctt-caacgtccaaattacccatagatgaaataaatccattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaa 30713183  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
    ||| ||||| |||||||||| ||| |||| |||||  | |||||  || ||||||| |||||| ||||||||||||||||| || | || ||||| ||||    
T  30713182 tatagcacaaaaagagaaacattgctttagggttggtgataaataaaagtaactcagcctcaaagcaggcaaaatagaattttcttgtggtaaagcccaa 30713083  T
Q  464 agcttgctctctttaatttcaacccattccttttct 499  Q
    ||||  || |||||||| |||| |||||| ||||||    
T  30713082 agctcactgtctttaatatcaagccattcattttct 30713047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 164 - 498
Target Start/End: Original strand, 30749793 - 30750126
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    |||||||||| |||||||| |||||||| ||  || | ||||  || ||  | |||||||||||||| ||||| |||||||||  ||||| |||  ||||    
T  30749793 caagatcatgaatcttgaatgaaatgtcgccagaaaattcatccatttttctatcttgaaagaatgatttttgatacaattcatcccaaaccatgatgcc 30749892  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| | ||||||| |||  || |||| ||||| |||||||| |||||||| ||   |||||| |  || ||||||||||| | ||||||||||||    
T  30749893 aacatctt-caacctccatattacccctagatgaaatcaatccattagccatccaaagccaaatcaatttttcctttaggatttctgcatctttgggaaa 30749991  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
    ||| ||||| |||||||||| |||||||| || || || |||||  || |||||||||||||| ||||||||||| ||||| ||||||||||||  ||||    
T  30749992 tatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaa 30750091  T
Q  464 agcttgctctctttaatttcaacccattccttttc 498  Q
    || |  || |||||||||| || ||||||||||||    
T  30750092 agttcactatctttaattttaagccattccttttc 30750126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 164 - 499
Target Start/End: Complemental strand, 30338478 - 30338147
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    |||||||||||||||||||||||||||||||  |||| ||||  |||||| | ||||||||||| || |||| |||||||||  |||||| ||| || ||    
T  30338478 caagatcatgcatcttgaaagaaatgtctccagaatattcatccatcttgctatcttgaaagaacgattttttgtacaattccttccaaaccatgtttcc 30338379  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| | ||||| |||||   ||| |    |||||||||||| |||||||| || |||||||| || || || ||||||||  |||||||||||||    
T  30338378 aacatctt-caacctctaaattcctctttgc---aataaatccattagccatccaaagttgaatcaattcttccttcaggatttctctatctttgggaaa 30338283  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
    ||| ||||| || ||||||| ||| |||| |||||  |||||||  || |||||||| ||||| ||||| |||||||| || |||| || ||||  ||||    
T  30338282 tatagcacaaaaggagaaacattgctttagggttggtgttaaataaaagtaactcaaactcaaagcaggtaaaatagatttttcatgtggtaaatcccaa 30338183  T
Q  464 agcttgctctctttaatttcaacccattccttttct 499  Q
    ||||  || |||||||| |||| |||||||||||||    
T  30338182 agctcactgtctttaatatcaagccattccttttct 30338147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 164 - 499
Target Start/End: Original strand, 30483554 - 30483885
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    |||||||||||||||||||||||||||||||  |||| ||||  |||||| | ||||||||||| || |||  |||||||||  |||||| ||| || ||    
T  30483554 caagatcatgcatcttgaaagaaatgtctccagaatattcatccatcttgctatcttgaaagaacgattttctgtacaattccttccaaaccatgtttcc 30483653  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| | ||||| |||||   ||| |    |||||||||||| |||||||| || |||||||| || || || ||||||||  |||||||||||||    
T  30483654 aacatctt-caacctctaaattcctctttgc---aataaatccattagccatccaaagctgaatcaattcttccttcaggatttctctatctttgggaaa 30483749  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
    ||| ||||| || ||||||| ||| |||| |||||  |||||||  || |||||||||||||| ||||| |||||||| || |||| || ||||  ||||    
T  30483750 tatagcacaaaaggagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaggtaaaatagatttttcatgtggtaaatcccaa 30483849  T
Q  464 agcttgctctctttaatttcaacccattccttttct 499  Q
    ||||  || |||||||| |||| |||||||||||||    
T  30483850 agctcactgtctttaatatcaagccattccttttct 30483885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 164 - 498
Target Start/End: Original strand, 30060519 - 30060852
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    |||| |||||||||||||| |||||||| ||  || | ||||  || ||  | |||||||||||||| |||||||||||||||  ||| | |||  ||||    
T  30060519 caaggtcatgcatcttgaatgaaatgtcgccagaaaattcatccatttttctatcttgaaagaatgatttttggtacaattcatcccacaccatgatgcc 30060618  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| | ||||||  | |  || |||| ||||| |||||||| |||||||| ||   |||||| || || ||||||||||| | ||||||||||||    
T  30060619 aacatctt-caacctccgtagtacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaa 30060717  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
    ||| ||||| |||||||||| |||||||| || || || |||||  || |||||||||||||| ||||||||||| ||||| ||||||||||||  ||||    
T  30060718 tatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaa 30060817  T
Q  464 agcttgctctctttaatttcaacccattccttttc 498  Q
    || |  || |||||||||| || ||||||||||||    
T  30060818 agttcactgtctttaattttaagccattccttttc 30060852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 164 - 499
Target Start/End: Original strand, 30400224 - 30400558
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    ||||||||||||||||||| |||||||  ||  || | ||||  || ||  |||||||||||||||| |||||||||||||||  ||||| |||  ||||    
T  30400224 caagatcatgcatcttgaatgaaatgttgccagaaaattcatccatttttttgtcttgaaagaatgatttttggtacaattcatcccaaaccatgatgcc 30400323  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| | ||||||  |||  ||  ||| ||||| |||||||| |||||||| || |||||||| || ||||| | ||||||| |||| ||||||||    
T  30400324 aacatctt-caacctccgtattaccccaagatgaaatcaatccattagccatccaaagctgaatcaattcttctttcaagatttccctatccttgggaaa 30400422  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaa 463  Q
    ||| ||||| |||||||||| ||| |||| ||| |  |||||||  || |||||||||||||| | | |||||||| |||| || |||| ||||| ||||    
T  30400423 tatagcacaaaaagagaaacattgctttagggtcggtgttaaataaaagtaactcaacctcaaagaacgcaaaatataattttcttctggtaaagcccaa 30400522  T
Q  464 agcttgctctctttaatttcaacccattccttttct 499  Q
    ||||   | |||||||| |||| |||||||||||||    
T  30400523 agctcagtgtctttaatatcaagccattccttttct 30400558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 164 - 438
Target Start/End: Complemental strand, 30242328 - 30242058
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcc 263  Q
    |||||||||||||||||||||||||||||||  |||| ||||  || ||| |||||||||| ||||| ||||||||||||||  |||||| ||| || ||    
T  30242328 caagatcatgcatcttgaaagaaatgtctccagaatattcatccattttgctgtcttgaaaaaatgatttttggtacaattccttccaaaccatgtttcc 30242229  T
Q  264 aacttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaa 363  Q
    ||| |||| | ||||| || ||   ||| |    |||||||||||| ||||| ||||| |||||||| || || || ||||||||   ||||||||||||    
T  30242228 aacatctt-caacctctaatttcctctttgc---aataaatccattagccattcagagctgaatcaattcttccttcaggatttctccatctttgggaaa 30242133  T
Q  364 tatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaat 438  Q
    ||| ||||| |||||||||| ||||||||  ||||  |||||||  || |||||||||||||| |||||||||||    
T  30242132 tatagcacaaaaagagaaacattgttttagagttggtgttaaataaaagtaactcaacctcaaagcaggcaaaat 30242058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 30677124 - 30677043
Alignment:
Q  164 caagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattc 245  Q
    |||||||||||||||| ||||||||||||||  |||| ||||  |||||  | |||||||||||||| ||||||||||||||    
T  30677124 caagatcatgcatcttaaaagaaatgtctccagaatattcatccatctttctatcttgaaagaatgatttttggtacaattc 30677043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 166 - 499
Target Start/End: Complemental strand, 7581673 - 7581341
Alignment:
Q  166 agatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgccaa 265  Q
    ||||||||||| |||||||||||||||| | ||| |||||  || |  |||||||||||||| ||||||||| |||||||| |||||||||| |||||||    
T  7581673 agatcatgcattttgaaagaaatgtctcttgaatcatcatccatatgaatgtcttgaaagaaagacttttggcacaattcattccaaatcatgttgccaa 7581574  T
Q  266 cttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaata 365  Q
    | |||| | |||||||||||||   |||| ||||||||| |||| |||||||| ||||||||||| || || || | |||||  |||||||| |||||||    
T  7581573 catctt-caacctccaaattttttctagatgaaataaattcattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttaggaaata 7581475  T
Q  366 tggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaaag 465  Q
    | ||||| |||| ||||| ||||||||||||||  | |||||| || || ||||| ||||  || |||||| ||||||||||||  | ||||  ||||||    
T  7581474 tagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaatctcagagctggcaaagtagaattctcatgcggtaaatcccaaag 7581375  T
Q  466 cttgctctctttaatttcaacccattccttttct 499  Q
    || ||||||||||||||||| |||||||||||||    
T  7581374 ctcgctctctttaatttcaaaccattccttttct 7581341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 166 - 447
Target Start/End: Original strand, 7099573 - 7099853
Alignment:
Q  166 agatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgccaa 265  Q
    ||||||||||| |||||||||||  ||| | |||||||||  || | ||||||||||||||| || ||||||||||||||| |||||||||| || ||||    
T  7099573 agatcatgcattttgaaagaaatcactcttgaataatcatccatatggatgtcttgaaagaaagatttttggtacaattcattccaaatcatgtttccaa 7099672  T
Q  266 cttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaata 365  Q
    | |||| | |||||||||||||   |||| |||||||||||||| |||||||| ||||||||||| || || || | |||||  ||||||||| ||||||    
T  7099673 catctt-caacctccaaattttttctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaata 7099771  T
Q  366 tggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctc 447  Q
    | ||||| |||| ||||| ||||||||||||||  | ||||||||| || ||||||||||| || |||||||||||||||||    
T  7099772 tagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaattctc 7099853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 165 - 499
Target Start/End: Original strand, 26707486 - 26707816
Alignment:
Q  165 aagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcagtccaaatcatattgcca 264  Q
    ||||||||||||||||||||||||||||||  |||| |||   |||||   ||||||||||||||| ||||||||||||||  |||||| ||| || |||    
T  26707486 aagatcatgcatcttgaaagaaatgtctccagaatattcacccatcttacagtcttgaaagaatgatttttggtacaattccttccaaaccatgtttcca 26707585  T
Q  265 acttctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaat 364  Q
    || |||| | ||||| |||||   ||| |    |||||||||||| |||||||| || |||||||| || || || | ||||||  ||||||||||||||    
T  26707586 acatctt-caacctctaaattcctctttgc---aataaatccattagccatccaaagttgaatcaattcttccttcaagatttctctatctttgggaaat 26707681  T
Q  365 atggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaaa 464  Q
    || ||||| |||||||||| ||| |||| |||||  |||||||  || |||||||||||||| |||||||||||||| || || | || ||||  |||||    
T  26707682 atagcacaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaggcaaaatagatttttcttgtggtaaatcccaaa 26707781  T
Q  465 gcttgctctctttaatttcaacccattccttttct 499  Q
    |||  || |||||||| |||| |||||||||||||    
T  26707782 gctcactgtctttaatatcaagccattccttttct 26707816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 499
Target Start/End: Complemental strand, 25293827 - 25293546
Alignment:
Q  217 tcttgaaagaatgacttttggtacaattcagtccaaatcatattgccaacttctttctacctccaaattttccttagacgaaataaatccattggccatc 316  Q
    |||||||||||||| |||||| |||||||| |||||| |||  ||||||| |||| | ||||||||||||||| |||| |||||||||||||| ||||||    
T  25293827 tcttgaaagaatgatttttggcacaattcattccaaaccatgctgccaacatctt-caacctccaaattttccctagatgaaataaatccattagccatc 25293729  T
Q  317 cagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataac 416  Q
    || |||||| |||| || || ||   |||||  |||||||| ||||| || ||||| ||||  |||| | | |||||||| |  |||||||  || || |    
T  25293728 caaagatgagtcaattcttccttatcgatttttgtatcttttggaaacatagcacaaaaagcaaaacatcgctttaaggtcggagttaaataaaagtagc 25293629  T
Q  417 tcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttct 499  Q
    |||||| ||||| ||| |||||||||||||| | |  ||||| ||||||| |||||   |||||||||| ||| || ||||||    
T  25293628 tcaaccacaaggaaggaaaaatagaattctcttgttgtaaagcccaaagcgtgctcagcttaatttcaagccactctttttct 25293546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University