View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_10 (Length: 447)
Name: NF11701_low_10
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 443
Target Start/End: Complemental strand, 5051224 - 5050805
Alignment:
| Q |
23 |
taacgtcgaggactaaagttgctaatagattttggagtcagggactgttttatgacatcgttatgcacatccatatactaaaatggttgttttccgactt |
122 |
Q |
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| T |
5051224 |
taacgtcgaggactaaagttgctaatagattttggagtcagggactgttttatgacatcgatatgcacatccatatactaaaatggttgtttttcgactt |
5051125 |
T |
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| Q |
123 |
tgtttttgtcaccttagttcctatatccacgtcttacattattgccggttnnnnnnnttgtcaacttaacttttaactgccaaatttaacgtcgaggatt |
222 |
Q |
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| T |
5051124 |
tgtttttgtcgccttagttcctatatccacgtcttacatcattgcttgttaaaaaaattgtcaacttaacttttaactgccaaatttaacgtcgaggatt |
5051025 |
T |
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| Q |
223 |
aaagcgattaacagattctataattagtgattgtttcatatttttatctgactcaaagacagggacggacctgaattgatacaggtgtggtaagtgccac |
322 |
Q |
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| T |
5051024 |
aaagcgactaacagattctacaattagtggctgtttcatatatttatttgactcaaagaccgggacgaacctgaattggtctaggtgtggtaagtgccac |
5050925 |
T |
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| Q |
323 |
accagcccggacccaaattttacaataaaaaattgttcagtccacaagcccagcccaacgaaacacaagaacccactttcccctcatttctcagcaaaca |
422 |
Q |
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| T |
5050924 |
accagctcgaacccaaattttaaaataaaaaattgttcaatccacaagcccagcccaacgaaacacaagaacccac-ttcccctcatttctctgcaaaca |
5050826 |
T |
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| Q |
423 |
cgcttttcattcttctctctc |
443 |
Q |
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| T |
5050825 |
cgcttttcattcttctttctc |
5050805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 5061763 - 5061667
Alignment:
| Q |
65 |
gactgttttatgacatcgttatgcacatccatatactaaaatggttgttttccgactttgtttttgtcaccttagttcctatatccacgtcttacat |
161 |
Q |
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| T |
5061763 |
gactattttgtgacatcgaagtgcacatctaactaccaaaatggttgttttccgaatttgtttatgtcactttagttcctatatccatgtcatacat |
5061667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 17240722 - 17240666
Alignment:
| Q |
17 |
caaatttaacgtcgaggactaaagttgctaatagattttggagtcagggactgtttt |
73 |
Q |
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| T |
17240722 |
caaatttaacgtcggggactaaagtggctaatgaattttgaagtcagggactctttt |
17240666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 41009576 - 41009635
Alignment:
| Q |
382 |
gaaacacaagaacccactttcccctcatttctcagcaaacacgcttttcattcttctctctc |
443 |
Q |
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| T |
41009576 |
gaaacacaagaacacactttccctccacttctcagcaa--acgcttttcattcttctttctc |
41009635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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