View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_12 (Length: 420)
Name: NF11701_low_12
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 7128741 - 7128357
Alignment:
| Q |
17 |
agcacagattactctagcttctgaatgttcaccataatttatctgcaatacaaaaaatcaccaaagtcgtcacatctgagttagataattatttcacaaa |
116 |
Q |
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| T |
7128741 |
agcacagattactctagcttctgaatgttccccataatttatctgcaatacaaaaaatcaccaaagtcgtcacatctgagttagataattatttcacaaa |
7128642 |
T |
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| Q |
117 |
ataaattaataatgaaagactcataaattcaaattattcgtttttacatgaacacgaacaatatcagtttttcatgttaccagacaagtacaacatcaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7128641 |
ataaattaataatgaaagactcataaattcaaattattcgtttttacatgaacacgaacaatatcagtttttcatgttaccagacaagtacaacatcaag |
7128542 |
T |
|
| Q |
217 |
aaaacaggaagtcaatccttatgtaaactttacaaatttagagagaatataattcatatcaaacagaaaatcatagccattgtagcactgaaaattgatc |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
7128541 |
aaaacaggaagtcaatccttatgtaaactttaaaaaattagagagaatataatgcatatcaaacagaaaatcatagcctttgtagcactgataattgatc |
7128442 |
T |
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| Q |
317 |
gaatgtgtgtcgtgtcccacttgcatcaatgtttaataccgacacgacactgacgcatgtgataacatttaatttatgtcatttt |
401 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7128441 |
gaatgtgtgtcgtgtcccacttgcatcattgtttaataccgacacgacactgacgcatgtgataacatttaatttatgtcatttt |
7128357 |
T |
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