View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_13 (Length: 414)
Name: NF11701_low_13
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 43698869 - 43698491
Alignment:
| Q |
17 |
ggacatctgtacgacactgtctcattcaattgcatcctcaagctgtattgttgaatacaggcatgcagagtcttatgcatgatccaaacccagtattttg |
116 |
Q |
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| T |
43698869 |
ggacatatgtacgacactgtctcattcaattgcatcctcaagctgtattgttgaatacaggcatgcagagtcttatgcatgatccaaacccagtattttg |
43698770 |
T |
|
| Q |
117 |
aattcaaatttactagaaaataatttattcagagcttccttaagatcttcaatactcttttaagagtaaccagcataataaacaaaggctgcctccatag |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43698769 |
aattcaaatttactagaaaataatttattcagggcttccttaagatcttcaatacccttttaagagtaaccagcataataaacaaaggctgcctccatag |
43698670 |
T |
|
| Q |
217 |
ttgtgtcnnnnnnnnnnnnggctgcatccataagttacaaaccaccgtaaaaatcagtgaagcagaattactttcctcgcaattaggttgaagcaagcat |
316 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43698669 |
ttgtgtcaaaaaagaaaaaggctgcatccataagttacaaaccaccgtaaaaatcagtgaagcagaattactttcctcgcaattaggttgaagcaagcat |
43698570 |
T |
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| Q |
317 |
tatcgtttgtccgatcatcgttgttggaaaaaagtaagattaaaaaagataaataggattgaataaagtcgccaattat |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43698569 |
tatcgtttgtccgatcatcgttgttggaaaaaagtaagattaaaaaagataaataggatcgaataaagtcgccaattat |
43698491 |
T |
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