View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_16 (Length: 382)
Name: NF11701_low_16
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 8457612 - 8457977
Alignment:
| Q |
1 |
tagaatattgagggttttcctttggcttcttgctttatatattcaggagttatatatagttttatacctcaattctgtcattggtagatattcaccaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8457612 |
tagaatattgagggttttcctttggcttcttgctttatatattcaggagttatatatagttttatacctcaattctgtcatttgtagatattcaccaaaa |
8457711 |
T |
|
| Q |
101 |
tatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaag |
200 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457712 |
tatgtgaaagaatatattgaaggaccaaagccaatgttatctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaag |
8457811 |
T |
|
| Q |
201 |
gtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457812 |
gtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttaca |
8457911 |
T |
|
| Q |
301 |
ctcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatg |
366 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8457912 |
ctcagctctcttattttttactctttgcagataaccatagacaacgaataatcaattggattgatg |
8457977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 366
Target Start/End: Complemental strand, 6827703 - 6827363
Alignment:
| Q |
21 |
tttggcttcttgctttatatattcaggagttatatatagttttatac--ctcaattctgtcattggtagatattcaccaaaatatgtgaaagaatatatt |
118 |
Q |
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||||||||||| ||||||||||||||||| |||||||||| || ||||||||||||||| |||| ||||||||||||||||| ||||| |||||| |
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| T |
6827703 |
tttggcttcttactttatatattcaggag----ctatagttttacacctctcaattctgtcatttgtagctattcaccaaaatatgttaaagactatatt |
6827608 |
T |
|
| Q |
119 |
gaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaaggtatactgcttaaaattc |
218 |
Q |
| |
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||||||||| | |||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6827607 |
gaaggagcacaaccactgttatctgtcggggagtatttggatgtttgcaactacaacggttctactttggactataaccaaggta---tgcttaaaattc |
6827511 |
T |
|
| Q |
219 |
taattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttacactcagctctcttattttt |
318 |
Q |
| |
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| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |||| |||||| ||||| ||||||||| |
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| T |
6827510 |
tcattcatgaaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttcttttgcattgtacacttagctcacttattttt |
6827411 |
T |
|
| Q |
319 |
tactctttgcagatagtcatagacaacgaataatcaattggattgatg |
366 |
Q |
| |
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|||| ||||||||||| ||||| |||||||||||||| |||||||||| |
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|
| T |
6827410 |
tactttttgcagatagccataggcaacgaataatcaaatggattgatg |
6827363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 9822441 - 9822781
Alignment:
| Q |
21 |
tttggcttcttgctttatatattcaggagttatatatagttttatac--ctcaattctgtcattggtagatattcaccaaaatatgtgaaagaatatatt |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||| || ||||||||||||||| |||| ||||||||||||||||| ||||| |||||| |
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| T |
9822441 |
tttggcttcttactttatatattcaggag----ctatagttttacacctctcaattctgtcatttgtagctattcaccaaaatatgttaaagactatatt |
9822536 |
T |
|
| Q |
119 |
gaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaaggtatactgcttaaaattc |
218 |
Q |
| |
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||||||||| | |||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9822537 |
gaaggagcacaaccactgttatctgtcggggagtatttggatgtttgcaactacaacggttctactttggactataaccaaggta---tgcttaaaattc |
9822633 |
T |
|
| Q |
219 |
taattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttacactcagctctcttattttt |
318 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |||| |||||| ||||| ||||||||| |
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| T |
9822634 |
tcattcatgaaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttcttttgcattgtacacttagctcacttattttt |
9822733 |
T |
|
| Q |
319 |
tactctttgcagatagtcatagacaacgaataatcaattggattgatg |
366 |
Q |
| |
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|||| ||||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
9822734 |
tactttttgcagatagccataggcaacgaataatcaaatggattgatg |
9822781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 3 - 308
Target Start/End: Complemental strand, 27964365 - 27964065
Alignment:
| Q |
3 |
gaatattgagggttttccttt-ggcttcttgctttatatattcaggagttatatatagttttatacctc--aattctgtcattggtagatattcaccaaa |
99 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||| |||| |||||||| || |
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| T |
27964365 |
gaatattgattgttttccttttggcttcttactttatatattcaggagctataa----ttttatacctctcaattctgtcatttgtagctattcacctaa |
27964270 |
T |
|
| Q |
100 |
atatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaa |
199 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
27964269 |
atatgttaaagagtatattgaaggagcaaagccactgttatctgtcggggagtatttggatgtttgcaactacaacggttctactttggactataaccaa |
27964170 |
T |
|
| Q |
200 |
ggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttac |
299 |
Q |
| |
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|||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |||| ||| |
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| T |
27964169 |
ggta---tgcttaaaattctcattcat-gaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttcttttgcattgtac |
27964074 |
T |
|
| Q |
300 |
actcagctc |
308 |
Q |
| |
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||| ||||| |
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| T |
27964073 |
acttagctc |
27964065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 18361425 - 18361362
Alignment:
| Q |
227 |
caaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttt |
290 |
Q |
| |
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|||||||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||| |
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|
| T |
18361425 |
caaataaatgaatactttttggttactaagcatgtgaatacattaccctttcaatacttctttt |
18361362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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