View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_17 (Length: 375)
Name: NF11701_low_17
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 361
Target Start/End: Original strand, 43473184 - 43473533
Alignment:
| Q |
12 |
aaggtcaatcctttctcagagcttttctttcccagccaaatcagcacgtgaagattctatgcataaaagcattgatggttgtcttgttaacacaaaagtt |
111 |
Q |
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| T |
43473184 |
aaggtcaatcctttctcagagcttttctttcccagccaaatcagcacgtaaagattctatgcataaaagcattgatggttgtcttgttaacacaaaagtt |
43473283 |
T |
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| Q |
112 |
aaacatgttcgagcttccactcttcatcattcaagtaagtccacaaactctgaagggaaatcaaatgaggcgaaaacaaacgctgagggttgtaataaga |
211 |
Q |
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| T |
43473284 |
aaacatgttcgagcttccactcttcatcattcaagtaagtccacaaactctgaagggaaatcaaatgaggcgaaaacaaacgctgagggttgtaataaga |
43473383 |
T |
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| Q |
212 |
gtagtactttgatatccatgcctggtttgaaacactctgtggtagtgattccttttccttatatcctttctttgttgtatcttctttgcctcttacattg |
311 |
Q |
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| T |
43473384 |
ggagtgctttgatatccatgcctggtttgaaacactctgtggtagtgattctttttccttatatcctttctttgttgtatcttctttgcctcttacattg |
43473483 |
T |
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| Q |
312 |
tttttctatgttcatgaatcataatactatttccattcaatgtgctagtt |
361 |
Q |
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| T |
43473484 |
tttttctatgttcatgaatcataatactatttccattcaatgtgctagtt |
43473533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 2081619 - 2081474
Alignment:
| Q |
66 |
ttctatgcataaaagcattgatggttgtcttgtt---aacacaaaagttaaacatgttcgagcttccactcttcatcattcaagtaagtccacaaactct |
162 |
Q |
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| T |
2081619 |
ttctatgcagaaaagcgttgatggttgtcttgttgttaagacaaagtttaaacatgtacaatcctctactcatcatcattcaagg----ccaaaaacttt |
2081524 |
T |
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| Q |
163 |
gaagggaaatcaaatgaggcgaaaacaaacgctgagggttgtaataagag |
212 |
Q |
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| T |
2081523 |
gaagggaaatcaaatgaagcaaaaacaagcactgaaggttgtaataagag |
2081474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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