View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_18 (Length: 339)
Name: NF11701_low_18
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 93 - 326
Target Start/End: Original strand, 14923412 - 14923648
Alignment:
| Q |
93 |
attataatataatcaaaccctatatctaagatatattcccaagaacacttcttcattgtcatctttttcaacnnnnnnnnn---gtacaaatccacatgc |
189 |
Q |
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| T |
14923412 |
attataatataatgaaaccctatatctaagatatattcccaagaacacttcttcattgtcatctttttcaacaaaaaaaaaaaagtacaaatccacatgc |
14923511 |
T |
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| Q |
190 |
atattcaatccatgtgatcccttgtattttgttgatttccaacccattcatcaacttacacttcttgaatgatttttgtatggctagtgatgcaacagtt |
289 |
Q |
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| T |
14923512 |
atattcaatccatatgatcccttgtattttgttgatttccaaccaattcatcaacttacacttcttgaatgatttttgcatggctagtgatgcaacattt |
14923611 |
T |
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| Q |
290 |
tcctctaacattactttcatcttcttttctttactct |
326 |
Q |
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| T |
14923612 |
tcctccaacattactttcatcttcttttctttactct |
14923648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 93 - 326
Target Start/End: Original strand, 14914926 - 14915157
Alignment:
| Q |
93 |
attataatataatcaaaccctatatctaagatatattcccaagaacacttcttcattgtcatctttttcaacnnnnnnnnn-gtacaaatccacatgcat |
191 |
Q |
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| T |
14914926 |
attataatataatcaaaccctatatctaagatatattcccaa---cacttcttcattgtcatctttttcaacaaaaaaaaaagtacaaatccacatgcat |
14915022 |
T |
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| Q |
192 |
attcaatccatgtgatcccttgtattttgttgatttccaacccattcatcaacttacacttcttgaatgatttttgtatggctagtgatgcaacagtttc |
291 |
Q |
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| T |
14915023 |
attcaatccatgtgatcccttgtattttgttgattttcaaccaattcatcaacttacacttcttgaatgatttttgcatggctagtgatgcaacattttc |
14915122 |
T |
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| Q |
292 |
ctctaacattactttcatcttcttttctttactct |
326 |
Q |
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| T |
14915123 |
ctccaacattactttcatcttcttttctttactct |
14915157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 14923324 - 14923364
Alignment:
| Q |
20 |
ttcaccaatctccactttcctcttttcatacttaataagga |
60 |
Q |
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| T |
14923324 |
ttcaccaatctccactttcctcttttcatacttaataagga |
14923364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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