View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11701_low_2 (Length: 880)

Name: NF11701_low_2
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11701_low_2
NF11701_low_2
[»] chr7 (4 HSPs)
chr7 (7-865)||(45242910-45243778)
chr7 (446-865)||(45230114-45230511)
chr7 (573-865)||(45237739-45238029)
chr7 (422-460)||(45237442-45237480)
[»] chr1 (8 HSPs)
chr1 (743-865)||(29467843-29467965)
chr1 (587-700)||(29423096-29423208)
chr1 (587-700)||(29467979-29468091)
chr1 (745-865)||(29443384-29443504)
chr1 (618-700)||(29453503-29453585)
chr1 (642-700)||(29443520-29443578)
chr1 (777-865)||(29423256-29423344)
chr1 (745-865)||(29453367-29453487)
[»] chr2 (28 HSPs)
chr2 (745-865)||(9061204-9061324)
chr2 (762-865)||(9320958-9321061)
chr2 (745-865)||(8573568-8573688)
chr2 (762-862)||(9328575-9328675)
chr2 (582-862)||(9291748-9292013)
chr2 (232-320)||(8576845-8576934)
chr2 (748-865)||(9284253-9284370)
chr2 (582-700)||(8579704-8579821)
chr2 (643-865)||(10347650-10347864)
chr2 (745-865)||(9065656-9065776)
chr2 (762-865)||(10353085-10353188)
chr2 (770-865)||(10371842-10371937)
chr2 (808-865)||(10335866-10335923)
chr2 (642-703)||(9061355-9061416)
chr2 (745-865)||(9274480-9274600)
chr2 (762-865)||(11987550-11987653)
chr2 (762-865)||(12018951-12019054)
chr2 (806-865)||(16269109-16269168)
chr2 (807-865)||(12012609-12012667)
chr2 (802-862)||(7115708-7115768)
chr2 (520-551)||(8576685-8576716)
chr2 (748-843)||(9315981-9316076)
chr2 (606-700)||(9284389-9284483)
chr2 (618-700)||(9364489-9364571)
chr2 (582-700)||(10335682-10335799)
chr2 (642-703)||(8573722-8573783)
chr2 (75-140)||(8580177-8580242)
chr2 (588-661)||(12019126-12019198)
[»] chr3 (2 HSPs)
chr3 (745-865)||(37462448-37462568)
chr3 (745-791)||(39427599-39427645)
[»] chr4 (2 HSPs)
chr4 (770-865)||(26574842-26574940)
chr4 (582-695)||(561009-561121)
[»] scaffold0667 (1 HSPs)
scaffold0667 (747-849)||(4432-4534)
[»] chr8 (2 HSPs)
chr8 (806-865)||(41966768-41966827)
chr8 (592-696)||(41966911-41967014)


Alignment Details
Target: chr7 (Bit Score: 667; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 7 - 865
Target Start/End: Original strand, 45242910 - 45243778
Alignment:
Q  7 cagagataagctcgtcaaaatgatgatttaggagtgaggatatataaaataacgaagaggnnnnnnnntcaattcatatcgagattctttctttaactaa 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||||||||    
T  45242910 cagaaataagctcgtcaaaatgatgatttaggagtgaggatatataaaataacgaagaggaaaaaaaatcaattcatatcgaggttctttctttaactaa 45243009  T
Q  107 atttatatgaaaatgaattgttgtctagcttaatgcttttcttcgtcacacacaaaacatacactctttattgtttctttcgaaattcaacatgcagtca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45243010 atttatatgaaaatgaattgttgtctagcttaatgcttttcttcgtcacacacacaacatacactctttattgtttctttcgaaattcaacatgcagtca 45243109  T
Q  207 ttttcaaaatcatgtaaaaatatgtacataaacaaacgatacaaaaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaa 306  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45243110 ttttcaaaatcatgtaaaaatatgtacataaacaaacgacacaaaaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaa 45243209  T
Q  307 atacatacaccataatatatgat--------gtttatccctatctctcttattctttatcttctagaacttacagatannnnnnnnnnnnnnnnnn---c 395  Q
    ||||||||||||||| |||||||        |||||||||||||||||||||||||||||||||||||||||||||||                     |    
T  45243210 atacatacaccataaaatatgatacagatgtgtttatccctatctctcttattctttatcttctagaacttacagatatttttttttaaaaaaaaaaaac 45243309  T
Q  396 atgcaaaaaccaatggatactgtacctgatatcaaaattttgatgtccagacatcatttctcaatcaaaaaagtttaggtaccgatatcatgcgatggta 495  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  45243310 atgcaaaaaccaatggataca--acctgatatcaaaattttgatgtccagacatgatttctcaatcaaaaaagtttaagtaccgatatcatgtgatggta 45243407  T
Q  496 tcattgaaatcaactgatatgcaaacattcagataaacaataagtaccttctcttgtatgtgctc-cgcatctcaacttgtgcaggaatcaataggtaag 594  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  45243408 tcattgaaatcaactgatatgcaaacattcagataaacaacaagtaccttctcttgtatgtgctttcgcatctcaacttgtgcaggaatcaataggtaag 45243507  T
Q  595 gaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaaaac 694  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45243508 gaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttgttcactgttgagatcataccaaaac 45243607  T
Q  695 agcttcctaggatgtacatacaacacaagtaacttgcatgatttgttacaaacagaactttacttcgatcactccaataacataaaggcctcaaagattc 794  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45243608 agcttcctaggatgtacatacaatacaagtaacttgcatgatttgttaccaacagaactttacttcgatcactcgaataacataaaggcctcaaagattc 45243707  T
Q  795 caaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 865  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45243708 caaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagaaccatattctt 45243778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 446 - 865
Target Start/End: Original strand, 45230114 - 45230511
Alignment:
Q  446 acatcatttctcaatcaaaaaagtttaggtaccgata-tcatgcgatggtatcattgaaatcaactgatatgcaaacattcagataaacaataagtacct 544  Q
    |||||||||||||||||||||||||||  | |||||| ||||  ||||  |||||||||||||||||||| ||||||||||||||||||||||| ||||     
T  45230114 acatcatttctcaatcaaaaaagtttaactcccgataatcatatgatgagatcattgaaatcaactgatacgcaaacattcagataaacaataaatacca 45230213  T
Q  545 tctcttgtatgtgctccgcatctcaacttgtgcaggaatcaataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtag 644  Q
    |||| ||||                 ||| ||| |||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  45230214 tctcatgta-----------------cttttgccggaatcgataggtaaggatggtgatac-aaggctttcagcacaaatcattacttcattgaaagtag 45230295  T
Q  645 gaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttcctaggatgtacatacaacacaagtaacttgcatgatttgttaca 744  Q
    ||||||||||||||| ||||| || |||||| |||| |||||||||||||||||||| ||||| |||     | ||||||||||||||||||||||| |     
T  45230296 gaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttccaaggatttac-----aaacaagtaacttgcatgatttgttgcc 45230390  T
Q  745 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 844  Q
    ||||| ||||||| | |||||||| ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||     
T  45230391 aacagtactttacgttgatcactcgaataacataaaggtctcaaagataccaaatgaaaattgaaccacgatttaaccaaagtaaaaagtttacaccaac 45230490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 573 - 865
Target Start/End: Original strand, 45237739 - 45238029
Alignment:
Q  573 tgtgcaggaatcaataggtaaggaagg----tgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagtt 668  Q
    ||||| |||||||||||||||||||||    || ||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||    
T  45237739 tgtgctggaatcaataggtaaggaaggaaggtggtac-aaggctttcagcacaaatcattacttcattcaaagtaggaattcctcgaacataaataactt 45237837  T
Q  669 attcactgttgagatcataccaaaacagcttcctaggatgtacatacaacacaagtaacttgcatgatttgttacaaacagaactttacttcgatcactc 768  Q
     |||| | ||||| ||||||||||||| ||||||||||| | || |||      |  | |||||||||||||||| |||||||||||||||||||| ||     
T  45237838 gttcattcttgaggtcataccaaaacaacttcctaggatttgcagacat-----gctagttgcatgatttgttaccaacagaactttacttcgatcgctt 45237932  T
Q  769 caataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 865  Q
     |||||||||||||||||||  ||| || |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  45237933 gaataacataaaggcctcaacaatttcagatgaaaattgaaacacgattcaactaaagtaaaaagtttacaccaactatctctagatccatattctt 45238029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 422 - 460
Target Start/End: Original strand, 45237442 - 45237480
Alignment:
Q  422 tgatatcaaaattttgatgtccagacatcatttctcaat 460  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  45237442 tgatatcaaaactttgatgtccaaacatcatttctcaat 45237480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 743 - 865
Target Start/End: Complemental strand, 29467965 - 29467843
Alignment:
Q  743 caaacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacacca 842  Q
    ||||||||||  |||||| ||| ||| |||||| ||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||| |||    
T  29467965 caaacagaaccatacttccatcgctcgaataacctaaaggcctcaaagattccaactgtaaagtgaaacacgatctaaccaaagtaaaaagtttacgcca 29467866  T
Q  843 aatatctctagagccatattctt 865  Q
    | |||||||| | ||||||||||    
T  29467865 actatctctacatccatattctt 29467843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 587 - 700
Target Start/End: Original strand, 29423096 - 29423208
Alignment:
Q  587 taggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcat 686  Q
    |||| |||||||||||||| ||| ||| || ||||||||||  ||| || |||| ||||||||||||||||| || ||| || |||||| ||||||||||    
T  29423096 tagggaaggaaggtgatac-aagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcat 29423194  T
Q  687 accaaaacagcttc 700  Q
    ||||||||||||||    
T  29423195 accaaaacagcttc 29423208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 587 - 700
Target Start/End: Complemental strand, 29468091 - 29467979
Alignment:
Q  587 taggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcat 686  Q
    |||| |||||||||| ||| ||| ||| || ||||||||||  ||||||| ||| |||||||||||| ||||||| |||  | |||||| ||||||||||    
T  29468091 tagggaaggaaggtggtac-aagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcat 29467993  T
Q  687 accaaaacagcttc 700  Q
    ||||||||| ||||    
T  29467992 accaaaacaacttc 29467979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 745 - 865
Target Start/End: Complemental strand, 29443504 - 29443384
Alignment:
Q  745 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 844  Q
    ||||||||  |||||| ||| ||| |||||| ||||  |||||||| |  |||| | ||| |||||||||||| | ||||||||||||||||||||||      
T  29443504 aacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagc 29443405  T
Q  845 tatctctagagccatattctt 865  Q
    |||||||| | ||||||||||    
T  29443404 tatctctacatccatattctt 29443384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 618 - 700
Target Start/End: Complemental strand, 29453585 - 29453503
Alignment:
Q  618 cacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 700  Q
    ||||||||||  ||| || |||| |||||||||||| |||| || ||| || |||||| ||||||||||||||||||||||||    
T  29453585 cacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttc 29453503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 700
Target Start/End: Complemental strand, 29443578 - 29443520
Alignment:
Q  642 taggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 700  Q
    |||||||||||| ||||||| |||   ||||||| ||||||||||||||||||||||||    
T  29443578 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 29443520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 777 - 865
Target Start/End: Original strand, 29423256 - 29423344
Alignment:
Q  777 taaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 865  Q
    |||| ||||||||| || |||| | ||  ||||||||||||   ||||||||||||||||||||||  |||||||| | ||||||||||    
T  29423256 taaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattctt 29423344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 745 - 865
Target Start/End: Complemental strand, 29453487 - 29453367
Alignment:
Q  745 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 844  Q
    ||||||||  |||||| ||| ||| |||||  |||||||| ||||| || |||| | ||| ||||||| ||||   ||||||||||||||| ||||||      
T  29453487 aacagaaccatacttccatcgctcgaataagctaaaggccacaaagttttcaaaggtaaaatgaaacatgattccgccaaagtaaaaagttcacaccagc 29453388  T
Q  845 tatctctagagccatattctt 865  Q
    |||||||| | ||||||||||    
T  29453387 tatctctacatccatattctt 29453367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 4e-28; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 745 - 865
Target Start/End: Complemental strand, 9061324 - 9061204
Alignment:
Q  745 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 844  Q
    |||||||| |||| || ||||||  |||||||||| ||||||||| | |||||| |  |||||||||||||||||||||||||||||||||||||||||     
T  9061324 aacagaaccttacctccatcactagaataacataacggcctcaaaaagtccaaaggtgaattgaaacacgatttaaccaaagtaaaaagtttacaccaac 9061225  T
Q  845 tatctctagagccatattctt 865  Q
    |||||||||| ||||| ||||    
T  9061224 tatctctagatccatagtctt 9061204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 762 - 865
Target Start/End: Original strand, 9320958 - 9321061
Alignment:
Q  762 atcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatat 861  Q
    ||||||| |||||| ||||||||||||||||| |||| | |||| | ||||||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  9320958 atcactcgaataacctaaaggcctcaaagatttcaaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacaccaactatctctagaaccatat 9321057  T
Q  862 tctt 865  Q
    ||||    
T  9321058 tctt 9321061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 745 - 865
Target Start/End: Complemental strand, 8573688 - 8573568
Alignment:
Q  745 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 844  Q
    |||||||| ||||||| ||||||  |||||| |||||||||| ||||||  |||||   | |||||||||||||||| |||||||||||||||||||||     
T  8573688 aacagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagtttacaccaac 8573589  T
Q  845 tatctctagagccatattctt 865  Q
    |||||||||| ||||||||||    
T  8573588 tatctctagaaccatattctt 8573568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 762 - 862
Target Start/End: Original strand, 9328575 - 9328675
Alignment:
Q  762 atcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatat 861  Q
    ||||||| |||||| ||||||||||||||||| |||| | |||| ||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||    
T  9328575 atcactcaaataacctaaaggcctcaaagatttcaaaggtaaatggaaacacgatttaaccatagtaaaaagtttacaccaactatctctatatccatat 9328674  T
Q  862 t 862  Q
    |    
T  9328675 t 9328675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 582 - 862
Target Start/End: Original strand, 9291748 - 9292013
Alignment:
Q  582 atcaataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgag 681  Q
    ||||| ||| |||||||||| ||  ||| |||||| ||||||||||  ||||||  ||| |||||||||||| ||||||| ||| || |||||| || |     
T  9291748 atcaacagggaaggaaggtggtag-aagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaa 9291846  T
Q  682 atcataccaaaacagcttcctaggatgtacatacaacacaagtaacttgcatgatttgttacaaacagaactttacttcgatcactccaataacataaag 781  Q
    |||||||||||||||||||||| ||| ||| | ||||| ||        | ||| ||    | |||||||| ||||||| ||| ||  ||||||||||||    
T  9291847 atcataccaaaacagcttcctatgatttacctccaacaaaa--------cctgagttccgtccaacagaaccttacttccatccctagaataacataaag 9291938  T
Q  782 gcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatatt 862  Q
    |||||||||||| |      ||| |||| | ||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  9291939 gcctcaaagatttc------aaagtgaaccgcgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatatt 9292013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 8576934 - 8576845
Alignment:
Q  232 acataaacaaacgatacaa-aaagttgattcgatttgacctctaataaaatgcagttatgttatttcgacatcaaaatacatacaccata 320  Q
    |||||||||||| | |||| |||| |||||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||    
T  8576934 acataaacaaactacacaagaaaggtgattcaatttgacctctaacaaaatgcagttgtgttatttcaacatcaaaatacatacaccata 8576845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 748 - 865
Target Start/End: Complemental strand, 9284370 - 9284253
Alignment:
Q  748 agaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatat 847  Q
    ||||| ||||| | ||||||  |||||| ||||||||||||||||| |||| | ||| |||| |  ||||||||||||||||||| |||||||||| |||    
T  9284370 agaaccttactaccatcactagaataacctaaaggcctcaaagatttcaaacgtaaagtgaaccgtgatttaaccaaagtaaaaattttacaccaactat 9284271  T
Q  848 ctctagagccatattctt 865  Q
    ||||||| ||||||||||    
T  9284270 ctctagaaccatattctt 9284253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 582 - 700
Target Start/End: Complemental strand, 8579821 - 8579704
Alignment:
Q  582 atcaataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgag 681  Q
    ||||||||| |||||||||| ||  |||| || || || |||||||   |||||||||| ||||||||||||||||| |||||| || |||||| |||||    
T  8579821 atcaataggcaaggaaggtggtag-aagggttccaacataaatcatagtttcattgaaattaggaattccttgaacacaagtaacttcttcacttttgag 8579723  T
Q  682 atcataccaaaacagcttc 700  Q
    |||||||||||||||||||    
T  8579722 atcataccaaaacagcttc 8579704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 643 - 865
Target Start/End: Original strand, 10347650 - 10347864
Alignment:
Q  643 aggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttcctaggatgtacatacaacacaagtaacttgcatgatttgtta 742  Q
    ||||||||||| ||||||| ||| || |||||| || | |||||||||||||||||||||| | ||||| | ||||| ||        |||||  | ||     
T  10347650 aggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttcctatgttgtacctccaacaaaa--------catgagctcttt 10347741  T
Q  743 caaacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacacca 842  Q
    | |||||||| ||||||| ||||||  |||||||||  ||||||||  ||| |||| | |||| ||||||||| | | ||| ||||||||||||||||||    
T  10347742 ccaacagaaccttacttccatcactagaataacatatgggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacacca 10347841  T
Q  843 aatatctctagagccatattctt 865  Q
    | |||||||| | ||||||||||    
T  10347842 actatctctacatccatattctt 10347864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 745 - 865
Target Start/End: Complemental strand, 9065776 - 9065656
Alignment:
Q  745 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 844  Q
    |||||||| ||||||| |||||   |||||| || ||||||| ||| |  ||||||  ||| |||||| ||||| ||||||||||||||||||||||||     
T  9065776 aacagaaccttacttccatcaccggaataacctagaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaac 9065677  T
Q  845 tatctctagagccatattctt 865  Q
    |||||||||| ||||||||||    
T  9065676 tatctctagatccatattctt 9065656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 762 - 865
Target Start/End: Original strand, 10353085 - 10353188
Alignment:
Q  762 atcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatat 861  Q
    ||||||| |||||| |||| |||||||||||| |||| | |||| |||| | |||||||||| ||||||||||||||||||| | |||||| | ||||||    
T  10353085 atcactcgaataacctaaaagcctcaaagattgcaaaggtaaatcgaaagaagatttaaccacagtaaaaagtttacaccaactctctctacatccatat 10353184  T
Q  862 tctt 865  Q
    ||||    
T  10353185 tctt 10353188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 770 - 865
Target Start/End: Original strand, 10371842 - 10371937
Alignment:
Q  770 aataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 865  Q
    ||||||| || || ||||||||||||||| | |||   ||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  10371842 aataacacaagggtctcaaagattccaaaggtaaacccaaacttgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctt 10371937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 808 - 865
Target Start/End: Original strand, 10335866 - 10335923
Alignment:
Q  808 aaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 865  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||    
T  10335866 aaacacgatttaaccaaagtaaaatgtttacaccaactatctctacagccatattctt 10335923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 703
Target Start/End: Complemental strand, 9061416 - 9061355
Alignment:
Q  642 taggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttccta 703  Q
    |||||||||||| ||||||| ||| || |||||| |||||||||||||||||||||||||||    
T  9061416 taggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttccta 9061355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 745 - 865
Target Start/End: Original strand, 9274480 - 9274600
Alignment:
Q  745 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 844  Q
    |||||||| ||||||| ||||||  |||||||||||||||| |||  ||||||||  | |  |||||| | ||  | ||||||||||||||||||||||     
T  9274480 aacagaaccttacttccatcactagaataacataaaggcctaaaaatttccaaatctacaaggaaacaaggttccatcaaagtaaaaagtttacaccaac 9274579  T
Q  845 tatctctagagccatattctt 865  Q
    ||||| |||| ||||||||||    
T  9274580 tatctgtagaaccatattctt 9274600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 762 - 865
Target Start/End: Complemental strand, 11987653 - 11987550
Alignment:
Q  762 atcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatat 861  Q
    ||||||| ||||||  ||||| |||||||||| |||| | |||  |||||||||||  | ||| || ||||||||||||||| |||||||| | ||||||    
T  11987653 atcactcgaataacccaaagggctcaaagatttcaaaggtaaaacgaaacacgattccatcaatgtgaaaagtttacaccaactatctctacatccatat 11987554  T
Q  862 tctt 865  Q
    ||||    
T  11987553 tctt 11987550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 762 - 865
Target Start/End: Complemental strand, 12019054 - 12018951
Alignment:
Q  762 atcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatat 861  Q
    ||||||| |||||| |||||| |||||| ||   ||| | |||  |||||||||||  | |||||||||||||||||||||| |||||||| | ||||||    
T  12019054 atcactcgaataacctaaagggctcaaaaatctaaaaggtaaaacgaaacacgattccatcaaagtaaaaagtttacaccaactatctctacatccatat 12018955  T
Q  862 tctt 865  Q
    ||||    
T  12018954 tctt 12018951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 806 - 865
Target Start/End: Original strand, 16269109 - 16269168
Alignment:
Q  806 tgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 865  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||| | ||||| ||||    
T  16269109 tgaaacacgatttaaccaaggtaaaaagtttgcaccaactatctctatatccatactctt 16269168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 807 - 865
Target Start/End: Complemental strand, 12012667 - 12012609
Alignment:
Q  807 gaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 865  Q
    |||||||||||  |||||||||||||||||||||||| ||||| || | ||||||||||    
T  12012667 gaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctt 12012609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 802 - 862
Target Start/End: Complemental strand, 7115768 - 7115708
Alignment:
Q  802 aaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatatt 862  Q
    |||| ||||||||| |||||||| |||||||||||||||||  | |||||||| |||||||    
T  7115768 aaatcgaaacacgaattaaccaatgtaaaaagtttacaccagctgtctctagatccatatt 7115708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 551
Target Start/End: Complemental strand, 8576716 - 8576685
Alignment:
Q  520 acattcagataaacaataagtaccttctcttg 551  Q
    ||||||||||||||||||||||||||||||||    
T  8576716 acattcagataaacaataagtaccttctcttg 8576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 748 - 843
Target Start/End: Original strand, 9315981 - 9316076
Alignment:
Q  748 agaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaa 843  Q
    ||||| |||||||  |||||  |||||| ||||||| ||||| | | ||||   ||| ||||||| || |||||||||||||||||||||||||||    
T  9315981 agaaccttacttccgtcactagaataacctaaaggcttcaaaaaattcaaagataaagtgaaacatgaattaaccaaagtaaaaagtttacaccaa 9316076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 606 - 700
Target Start/End: Complemental strand, 9284483 - 9284389
Alignment:
Q  606 caaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 700  Q
    |||| |||||| ||||||||||  ||||||  ||| |||||||||||| ||||||| ||| ||  ||||| || | ||||||||||| |||||||    
T  9284483 caagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttc 9284389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 618 - 700
Target Start/End: Original strand, 9364489 - 9364571
Alignment:
Q  618 cacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 700  Q
    ||||||||||  ||||||| | | ||||||||||| |||||  |||||  | |||||| |||||||| |||||||||||||||    
T  9364489 cacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaacagcttc 9364571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 582 - 700
Target Start/End: Original strand, 10335682 - 10335799
Alignment:
Q  582 atcaataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgag 681  Q
    ||||| ||||||||||||||| || ||| ||| || ||||||||||    ||||  ||| |||||||||||| ||||||| ||| || |||||| || |     
T  10335682 atcaacaggtaaggaaggtgaaac-aagacttccaacacaaatcatagtgtcatccaaattaggaattccttcaacataactaatttgttcactcttcaa 10335780  T
Q  682 atcataccaaaacagcttc 700  Q
    |||||||||||||| ||||    
T  10335781 atcataccaaaacaacttc 10335799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 703
Target Start/End: Complemental strand, 8573783 - 8573722
Alignment:
Q  642 taggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttccta 703  Q
    |||||||||||| ||||||| | | || |||||| || | ||||||||||||||||||||||    
T  8573783 taggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttccta 8573722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 8580242 - 8580177
Alignment:
Q  75 tcaattcatatcgagattctttctttaactaaatttatatgaaaatgaattgttgtctagcttaat 140  Q
    ||||||||||| || ||||||||||||||  |||||||| ||||||| ||  ||||||| ||||||    
T  8580242 tcaattcatattgatattctttctttaacctaatttataagaaaatggatcattgtctaacttaat 8580177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 661
Target Start/End: Complemental strand, 12019198 - 12019126
Alignment:
Q  588 aggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataa 661  Q
    |||||||||||||| ||| ||| ||| || ||||||||||  |||||| |||| |||||||||||| |||||||    
T  12019198 aggtaaggaaggtggtac-aagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataa 12019126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 745 - 865
Target Start/End: Original strand, 37462448 - 37462568
Alignment:
Q  745 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 844  Q
    |||| ||| ||||||| ||||||  |||||||||||||||||||||||| |||| |  || |||||||||||||| ||| |||| ||||||||||||||     
T  37462448 aacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttacaccaac 37462547  T
Q  845 tatctctagagccatattctt 865  Q
    |||||||||| ||||||||||    
T  37462548 tatctctagatccatattctt 37462568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 745 - 791
Target Start/End: Original strand, 39427599 - 39427645
Alignment:
Q  745 aacagaactttacttcgatcactccaataacataaaggcctcaaaga 791  Q
    |||||||||||||||| ||||||  |||||||||||||| |||||||    
T  39427599 aacagaactttacttctatcactggaataacataaaggcttcaaaga 39427645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 770 - 865
Target Start/End: Original strand, 26574842 - 26574940
Alignment:
Q  770 aataacataaaggcctcaaagattccaaatgaaaatt---gaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 865  Q
    |||||| |||| ||||||||||||||| | | ||||    ||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||||    
T  26574842 aataacctaaaagcctcaaagattccacaggtaaatcatcgaaacacgatttaaccacagtaaaaagtttacaccaactatctctacatccatattctt 26574940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 695
Target Start/End: Original strand, 561009 - 561121
Alignment:
Q  582 atcaataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgag 681  Q
    ||||||||| |||||||||| ||  ||||||| || || ||||||| |||| ||||| | ||||||||||| ||||| | |||  |  || ||| |||||    
T  561009 atcaataggcaaggaaggtggtag-aaggcttccaacataaatcataactttattgatattaggaattcctggaacacaggtagctcttttacttttgag 561107  T
Q  682 atcataccaaaaca 695  Q
    ||||||||||||||    
T  561108 atcataccaaaaca 561121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 747 - 849
Target Start/End: Original strand, 4432 - 4534
Alignment:
Q  747 cagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaata 846  Q
    |||||| ||||||| ||||||  ||||||||||||| ||| |||||| ||||||  || ||| ||||||||| | || ||||||||||||||||||| ||    
T  4432 cagaaccttacttccatcactagaataacataaaggactcgaagatttcaaatgtgaagtgacacacgatttcatcatagtaaaaagtttacaccaacta 4531  T
Q  847 tct 849  Q
    |||    
T  4532 tct 4534  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 806 - 865
Target Start/End: Complemental strand, 41966827 - 41966768
Alignment:
Q  806 tgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctt 865  Q
    ||||||| |||||||||||||||||||||||||||||  |||||||||| | ||||||||    
T  41966827 tgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctt 41966768  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 592 - 696
Target Start/End: Complemental strand, 41967014 - 41966911
Alignment:
Q  592 aaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaa 691  Q
    |||||||||| ||| ||| ||| || |||||| |||  ||||||  ||| |||||||||||| ||||||||||| || |||||| || | ||||||||||    
T  41967014 aaggaaggtggtac-aagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaa 41966916  T
Q  692 aacag 696  Q
    |||||    
T  41966915 aacag 41966911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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