View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11701_low_21 (Length: 333)
Name: NF11701_low_21
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_21 |
 | |
|
| [»] scaffold0577 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0607 (1 HSPs) |
| | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 46091626 - 46091935
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaa-aagtattaatgagctccatgttccattgtttct |
114 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
46091626 |
acatcatgagttaccaaaggaagcaacg-agtgttaaaaatgtttctagcagtaacagtgtcaaaaaaagtattaatgagctccatattccactgtttct |
46091724 |
T |
|
| Q |
115 |
ggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatc |
214 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46091725 |
cgggtgtaatcaacaagtcagaaatagtgatggatggccactctaagtgatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatc |
46091824 |
T |
|
| Q |
215 |
ccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggatta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46091825 |
ccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcacatctttagcactccaaatactacgccaaacataactaggatta |
46091924 |
T |
|
| Q |
315 |
tggcctatgct |
325 |
Q |
| |
|
||||||||||| |
|
|
| T |
46091925 |
tggcctatgct |
46091935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 32956492 - 32956184
Alignment:
| Q |
18 |
atcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaa-gtattaatgagctccatgttccattgtttctgg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
32956492 |
atcatgagttaccgaaggaagcaacggagtgttaaaaatatttctggcagtaccagagtcaaaaaaagtattaatgagctccatattccactgtttctgg |
32956393 |
T |
|
| Q |
117 |
ggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatccc |
216 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32956392 |
ggtgtaatcaacaagtcagaaacaatgatggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatccc |
32956293 |
T |
|
| Q |
217 |
aaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggattatg |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32956292 |
aaactggtatatgttcgcctgtacctatactccactgaaaaccacgtcgaatcacatctttagcactccaaatactacgccaaacataactaggattatg |
32956193 |
T |
|
| Q |
317 |
gcctatgct |
325 |
Q |
| |
|
||| ||||| |
|
|
| T |
32956192 |
gccaatgct |
32956184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 88 - 325
Target Start/End: Original strand, 7437443 - 7437680
Alignment:
| Q |
88 |
taatgagctccatgttccattgtttctggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcg |
187 |
Q |
| |
|
|||| |||||||| ||||||||||| ||| ||| || |||||| ||||||||| | || |||| ||||||||| | ||||||||| || || |||||||| |
|
|
| T |
7437443 |
taattagctccatattccattgtttttggtgtgtaaccaacaaatcagaaacaataatagatggccactccaaatgatgatgagtagacggcaaaattcg |
7437542 |
T |
|
| Q |
188 |
tgcaacattactgatccaagggtgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaa |
287 |
Q |
| |
|
|| |||||| || ||| ||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||| ||||||| ||||| |||||||| |
|
|
| T |
7437543 |
tgttgcattaccgagccatgggtgatcccaaactggaatgtgttctcctgtgcctatactccactcaaaaccacggcgaatcacgtctttggcactccat |
7437642 |
T |
|
| Q |
288 |
atactacgccaaacataactaggattatggcctatgct |
325 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
7437643 |
atgctacgccaaacataactaggattaaggcctatgct |
7437680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 325
Target Start/End: Complemental strand, 7607117 - 7606939
Alignment:
| Q |
147 |
gatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatcccaaactggtatgtgttcgcctgtacctatac |
246 |
Q |
| |
|
|||| ||||||||| | || | |||| || ||||||||||||| ||||||| ||| |||||||| |||||||| |||||||| ||| | ||||||| |
|
|
| T |
7607117 |
gatggccactccaaatgataacgagtagacggtaaaattcgtgttgcattactaggccatgggtgatctcaaactggaatgtgttctcctatgcctatac |
7607018 |
T |
|
| Q |
247 |
tccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggattatggcctatgct |
325 |
Q |
| |
|
|||||||||||| || ||||||| ||||| |||||| | || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7607017 |
tccactgaaaactacatcgaatcacgtctttggcactcaatatgctacgccaaacataactaggattatggcctatgct |
7606939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 7436617 - 7436684
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaa |
83 |
Q |
| |
|
|||||||||||||||||||| | || || || ||||||||||||||||||| | || |||||||||| |
|
|
| T |
7436617 |
acatcatgagttaccgaagggaataatggggtattaaaaatatttctagcagaagcactgtcaaaaaa |
7436684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 9610587 - 9610896
Alignment:
| Q |
18 |
atcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaa-aaagtattaatgagctccatgttccattgtttctgg |
116 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| ||||| |||||| || |||||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
9610587 |
atcatgagttactgaaggaagtaacggagtgttaaaaatgtttctggcagtactagagtcaaagaaagtattaatgagctccatattccactgtttctgg |
9610686 |
T |
|
| Q |
117 |
ggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatccc |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9610687 |
ggtgtaatcaacaagtcagaaacagtgatggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatccc |
9610786 |
T |
|
| Q |
217 |
aaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggattatg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9610787 |
aaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcacatctttagcactccaaatactacgccaaacataactaggattatg |
9610886 |
T |
|
| Q |
317 |
gcctatgctt |
326 |
Q |
| |
|
||| |||||| |
|
|
| T |
9610887 |
gccaatgctt |
9610896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 30797883 - 30798088
Alignment:
| Q |
18 |
atcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaa-aaagtattaatgagctccatgttccattgtttctgg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
30797883 |
atcatgagttaccgaaggaagcaacggagtgttaaaaatatttctggcagtactagagtcaaagaaagtattaatgagctccatattccactgtttctgg |
30797982 |
T |
|
| Q |
117 |
ggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatccc |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
30797983 |
ggtgtaatcaacaagtcagaaacagtgatggaaggccactccgattgatgatgagttgaaggtaaaattcgttcaattttactgatccaaggatgatccc |
30798082 |
T |
|
| Q |
217 |
aaactg |
222 |
Q |
| |
|
|||||| |
|
|
| T |
30798083 |
aaactg |
30798088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 27453558 - 27453864
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaa-------gtattaatgagctccatgttccatt |
108 |
Q |
| |
|
|||||||||||||||||||| | ||| |||| |||||||||||||||||| || | ||| |||||| | |||||| |||||||| ||||||| |
|
|
| T |
27453558 |
acatcatgagttaccgaagggaataacagagtattaaaaatatttctagcaatagtattgtaaaaaaaaaaagaagcattaattagctccatattccatt |
27453657 |
T |
|
| Q |
109 |
gtttctggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagg |
208 |
Q |
| |
|
|||||||||||| || |||||||||||||||| |||| ||| |||| |||| | |||||| || || ||||||||||||||||||||||||| ||| || |
|
|
| T |
27453658 |
gtttctggggtgtaaacaacaagtcagaaacaatgatatatggccacaccaaatgatgatgggtagacggtaaaattcgtgcaacattactgagccatgg |
27453757 |
T |
|
| Q |
209 |
gtgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataacta |
308 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||||||||||||||| |||| ||||||| ||||| |||||||| || |||||||||||||||||| |
|
|
| T |
27453758 |
gtgatcccaaactggaatgtgttcttttgtgcctatactccactgaaaagcacgacgaatcacgtctttggcactccatatgctacgccaaacataacta |
27453857 |
T |
|
| Q |
309 |
ggattat |
315 |
Q |
| |
|
||||||| |
|
|
| T |
27453858 |
ggattat |
27453864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 29243190 - 29243348
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaa-aagtattaatgagctccatgttccattgtttct |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||| ||||| ||||| | |
|
|
| T |
29243190 |
acatcatgagttaccgaaggaagcaacagagtgttaaaaatatttctagcagtaacaaagtcaaaaaaagtattaataagctccatattccactgttttt |
29243289 |
T |
|
| Q |
115 |
ggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagtt |
173 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
29243290 |
ggggtgtaatcaacaagttagaaacagtgatggatggccattccaattgatgatgagtt |
29243348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 26430278 - 26430586
Alignment:
| Q |
18 |
atcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaa-aaagtattaatgagctccatgttccattgtttctgg |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||| |||||| || ||||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
26430278 |
atcatgagttactgaaggaagcaacggagtgttaaaaatgtttctggcagtactagaatcaaagaaagtattaatgagctccatattccactgtttctgg |
26430377 |
T |
|
| Q |
117 |
ggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatccc |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26430378 |
ggtgtaatcaacaagtcagaaacagtgatggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatccc |
26430477 |
T |
|
| Q |
217 |
aaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggattatg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26430478 |
aaactggtatgtgttcgcctgtacctatactccactgaaaaccactccgaatcacatctttagcactccaaatactacgccaaacataactaggattatg |
26430577 |
T |
|
| Q |
317 |
gcctatgct |
325 |
Q |
| |
|
||| ||||| |
|
|
| T |
26430578 |
gccaatgct |
26430586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 26007145 - 26007463
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaa---------gtattaatgagctccatgttcca |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||| ||||||||||||||||| | ||| |||||| | |||||| |||||||| ||||| |
|
|
| T |
26007145 |
acatcatgagttaccgaaggaaataacggggtattataaatatttctagcagtagtattgtaaaaaaaaaaaaaaaagcattaattagctccatattcca |
26007244 |
T |
|
| Q |
107 |
ttgtttctggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaa |
206 |
Q |
| |
|
|||||| ||||||| || |||||||| ||||||| |||| |||| ||||||||| | ||||||||| || |||||||||| |||| ||||||| | ||| |
|
|
| T |
26007245 |
ttgtttttggggtgtaaccaacaagttagaaacaatgatagatggccactccaaatgatgatgagtagacggtaaaattcatgcagcattactaagccat |
26007344 |
T |
|
| Q |
207 |
gggtgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataac |
306 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||||||||| ||||||| ||| ||||||| ||||| |||||||| || |||||||||||||||| |
|
|
| T |
26007345 |
gggtgatcccaaactggaatgtgttctcctgtgtctatactccaatgaaaactacggcgaatcacgtctttggcactccatatgctacgccaaacataac |
26007444 |
T |
|
| Q |
307 |
taggattatggcctatgct |
325 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26007445 |
taggattatggcctatgct |
26007463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 49 - 325
Target Start/End: Complemental strand, 54551631 - 54551354
Alignment:
| Q |
49 |
ttaaaaatatttctagcagtaacagtgtcaaaaaa-gtattaatgagctccatgttccattgtttctggggtgcaatcaacaagtcagaaacagtgatgg |
147 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||| | |||||| || ||||| |||||||| || |||| || || || |||||||||||||||||| | |
|
|
| T |
54551631 |
ttaaaaatatttctgacagtagcattgtcaaaaaaagcattaattagatccatattccattgcttatgggatgtaaccagcaagtcagaaacagtgatag |
54551532 |
T |
|
| Q |
148 |
atgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatcccaaactggtatgtgttcgcctgtacctatact |
247 |
Q |
| |
|
||| ||||| ||| | |||||||| | ||||||||||||||| ||||| ||| ||| |||||||| |||||||| |||| | ||||| |||||||| |
|
|
| T |
54551531 |
atggccacttcaaatgttgatgagtgaacggtaaaattcgtgcagcattattgagccatgggtgatctcaaactggaatgttctatcctgtgcctatact |
54551432 |
T |
|
| Q |
248 |
ccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggattatggcctatgct |
325 |
Q |
| |
|
||||||||||||||| |||| || ||||| |||||||| || |||||||||||||||||||||||||| |||||||| |
|
|
| T |
54551431 |
ccactgaaaaccacgacgaagcacgtctttggcactccatatgctacgccaaacataactaggattatgacctatgct |
54551354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 48445714 - 48445413
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaagta---ttaatgagctccatgttccattgttt |
112 |
Q |
| |
|
|||||||||||||||||| | | |||||||| ||||||||||||||||| || | ||| |||||| | ||||| |||||||| |||| |||||| |
|
|
| T |
48445714 |
acatcatgagttaccgaatggaataacggagtattaaaaatatttctagctatagtattgtaaaaaaaaaaacattaattagctccatattcccttgttt |
48445615 |
T |
|
| Q |
113 |
ctggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtga |
212 |
Q |
| |
|
||||||| || ||||||||||||||| ||||| |||| || | ||| | |||||||| || ||||||||||||||| | ||||||| ||| | ||| |
|
|
| T |
48445614 |
ttggggtgtaaccaacaagtcagaaaccgtgatagatggtcatttcaaatgatgatgagaagacggtaaaattcgtgcagc-ttactgagccatgaatga |
48445516 |
T |
|
| Q |
213 |
tcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggat |
312 |
Q |
| |
|
||||||| ||| | ||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||| |
|
|
| T |
48445515 |
tcccaaattggaaattgttctcctgtgcctatgctccactgaaaaccacg----------tctttggcactccatatgctacgccaaacataactaggat |
48445426 |
T |
|
| Q |
313 |
tatggcctatgct |
325 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
48445425 |
tatgacctatgct |
48445413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 22360345 - 22360467
Alignment:
| Q |
49 |
ttaaaaatatttctagcagtaacagtgtc-aaaaaagtattaatgagctccatgttccattgtttctggggtgcaatcaacaagtcagaaacagtgatgg |
147 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||||| |||||| |||||| |||| |||||| ||||||| || ||||||||||||||||||||| | |
|
|
| T |
22360345 |
ttaaaaatatttctagcagtagtattgtccaaaaaagcattaatttactccatattccgttgtttttggggtgtaaccaacaagtcagaaacagtgatag |
22360444 |
T |
|
| Q |
148 |
atgaccactccaattaatgatga |
170 |
Q |
| |
|
||||||||||||| | ||||||| |
|
|
| T |
22360445 |
atgaccactccaaatgatgatga |
22360467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 32577091 - 32576784
Alignment:
| Q |
18 |
atcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaa-aaagtattaatgagctccatgttccattgtttctgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||| || || |||||| ||||||||||||||||||| ||||| ||||||| | |
|
|
| T |
32577091 |
atcatgagttaccgaaggaagcaacggagtgt-aaaaatatttctggcaatactagagtcaaagaaagtattaatgagctccacattccactgtttctcg |
32576993 |
T |
|
| Q |
117 |
ggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatccc |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32576992 |
ggtgtaatcaacaagtcagaaacagtgatggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggatgatccc |
32576893 |
T |
|
| Q |
217 |
aaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggattatg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32576892 |
aaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcacatctttagcactccaaatactacgccaaacataactaggattatg |
32576793 |
T |
|
| Q |
317 |
gcctatgct |
325 |
Q |
| |
|
||| ||||| |
|
|
| T |
32576792 |
gccaatgct |
32576784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 32283848 - 32284158
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaagt-attaatgagctccatgttccattgtttct |
114 |
Q |
| |
|
|||||||||||||||||||| | | ||||| ||||||||||||||||||||| || |||||||||| |||||| | |||||| ||||||| ||| | |
|
|
| T |
32283848 |
acatcatgagttaccgaagggaatagtggagtattaaaaatatttctagcagtagcattgtcaaaaaaaacattaattatctccatattccattattttt |
32283947 |
T |
|
| Q |
115 |
ggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatc |
214 |
Q |
| |
|
|| ||| || |||||| ||||||||||| || |||| |||||||| | ||||||||| | ||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
32283948 |
ggtgtgtaaccaacaaatcagaaacagtaatagatggacactccaaatgatgatgagtatacggtaaaattcgtgttgcattactgagccatgggtgatc |
32284047 |
T |
|
| Q |
215 |
ccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggatta |
314 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||| ||||| ||| |||| || |||||||||||||||||||||||| |
|
|
| T |
32284048 |
ccaaactggaatgtgttctcctgtgcctatactccactgaaaaccacgtcgaatcacgtctttggcagtccatatgctacgccaaacataactaggatta |
32284147 |
T |
|
| Q |
315 |
tggcctatgct |
325 |
Q |
| |
|
||||||||||| |
|
|
| T |
32284148 |
tggcctatgct |
32284158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 3963379 - 3963688
Alignment:
| Q |
18 |
atcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaa-aaagtattaatgagctccatgttccattgtttctgg |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||| | |||||| || |||||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
3963379 |
atcatgagttactgaaggaagcaacggagtgttaaaaatgtttatggcagtactagagtcaaagaaagtattaatgagctccatattccactgtttctgg |
3963478 |
T |
|
| Q |
117 |
ggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatccc |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| | |
|
|
| T |
3963479 |
ggtgtaatcaacaagtcagaaacagtgatggaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccagggatgatctc |
3963578 |
T |
|
| Q |
217 |
aaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggattatg |
316 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3963579 |
aaactggtatgtgttcacctgtacctatactccactgaaaaccacgccgaatcacatctttagcactccaaatactacgccaaacataactaggattatg |
3963678 |
T |
|
| Q |
317 |
gcctatgctt |
326 |
Q |
| |
|
||| |||||| |
|
|
| T |
3963679 |
gccaatgctt |
3963688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 9359799 - 9359486
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaagtat----taatgagctccatgttccattgtt |
111 |
Q |
| |
|
|||||||||| ||||||||| | ||||| || |||||||||||||||||||| || |||||||||| || |||| |||||||| |||||||||| |
|
|
| T |
9359799 |
acatcatgagctaccgaagggaataacggggtattaaaaatatttctagcagttgcattgtcaaaaaaaaataatttaattagctccatattccattgtt |
9359700 |
T |
|
| Q |
112 |
tctggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtg |
211 |
Q |
| |
|
| ||||||| || ||||||||||||||||||||| |||| ||||||||| | |||||| || || ||||||||||||||| ||||||||| || ||||| |
|
|
| T |
9359699 |
tttggggtgtaaccaacaagtcagaaacagtgatagatggccactccaaatgatgatgggtagacggtaaaattcgtgcagcattactgagtcatgggtg |
9359600 |
T |
|
| Q |
212 |
atcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactagga |
311 |
Q |
| |
|
|||||||||||| ||||| || ||| ||||||||||||||||||||||| ||||||| ||||| |||||||| || |||||||||||||||| |||| |
|
|
| T |
9359599 |
atcccaaactggaatgtgatcttttgtgcctatactccactgaaaaccacggcgaatcacgtctttggcactccatatgctacgccaaacataacaagga |
9359500 |
T |
|
| Q |
312 |
ttatggcctatgct |
325 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9359499 |
ttatggcctatgct |
9359486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 30465724 - 30465535
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaa-gtattaatgagctccatgttcca---ttgtt |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
30465724 |
acatcaagagttaccgaaggaagcaacggagtgttaaaaatgtttctagcagtaacagtgtcaaaaaaagtattaatgagctccatattccactgttgtt |
30465625 |
T |
|
| Q |
112 |
tctggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactga |
201 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| ||| ||||||||| | ||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
30465624 |
tctggggtgtaatcaacaagtcagaaacggtgatgaatggccactccaagtgatgataagttgaaggtaaaattcgtgcaatattactga |
30465535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 24268804 - 24269108
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaagt-attaatgagctccatgttccattgtttct |
114 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||| |||||||||||||||||| || |||||||||| ||||| ||||||| ||||||||||| | |
|
|
| T |
24268804 |
acatcatgagtcaccgaagggagcaacggggtgttgaaaatatttctagcagtagcattgtcaaaaaaaacattaactggctccatattccattgttttt |
24268903 |
T |
|
| Q |
115 |
ggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatc |
214 |
Q |
| |
|
| | || || |||||||||||||| |||||| || |||||| || ||||||| | || |||| |||| ||||||||||||||| ||| || |||| |
|
|
| T |
24268904 |
gagatgtaaccaacaagtcagaaatagtgatatgtggccactctaa---atgatgactagacggtacaatttgtgcaacattactgagccatggatgatt |
24269000 |
T |
|
| Q |
215 |
ccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggatta |
314 |
Q |
| |
|
||||| |||||| ||||| | ||| |||||||||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24269001 |
ccaaattggtatatgttcacatgttcctatactccactgaaaattgcgacgaatcacatcttttgcactccaaatactacgccaaacataactaggatta |
24269100 |
T |
|
| Q |
315 |
tggcctat |
322 |
Q |
| |
|
|||||||| |
|
|
| T |
24269101 |
tggcctat |
24269108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 33337247 - 33337325
Alignment:
| Q |
237 |
gtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggattat |
315 |
Q |
| |
|
|||||||||||||| ||||||||| | |||||| |||||| |||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
33337247 |
gtacctatactccattgaaaaccaaggtgaatcacatctttcacactccaaatactacgccaaccatagctatgattat |
33337325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 3282 - 3589
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaa-aagtattaatgagctccatgttccattgtttct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |||||| ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
3282 |
acatcatgagttaccgaaggaagcaacgtagtgttaaaaatatatctagcagtaacattatcaaaaaaagtattgatgagctccatattccactgtttct |
3381 |
T |
|
| Q |
115 |
ggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatc |
214 |
Q |
| |
|
|||||| || |||||| ||||||| |||| | ||| ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3382 |
ggggtgtaagcaacaaatcagaaatagtggtagatagccactccaagtgatgatgagttgatggtaaaattcgtgcaacattactgatccaagggtgatc |
3481 |
T |
|
| Q |
215 |
ccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggatta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3482 |
ccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcacatctttagcactccaaatactacgccaaacataactaggatta |
3581 |
T |
|
| Q |
315 |
tggcctat |
322 |
Q |
| |
|
|||||||| |
|
|
| T |
3582 |
tggcctat |
3589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 186194 - 185886
Alignment:
| Q |
18 |
atcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaa-aaagtattaatgagctccatgttccattgtttctgg |
116 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||| | |||||| || |||||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
186194 |
atcatgagttaccaaaggaagcaacgaagtgttaaaaatatttatggcagtactagagtcaaagaaagtattaatgagctccatattccactgtttctgg |
186095 |
T |
|
| Q |
117 |
ggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatccc |
216 |
Q |
| |
|
|||| ||||||||||||||||||| |||| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
186094 |
ggtgtaatcaacaagtcagaaacaatgatagaaggccactccaattgatgatgagttgaaggtaaaattcgtgcaacattactgatccaaggttgatccc |
185995 |
T |
|
| Q |
217 |
aaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggattatg |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
185994 |
aaactggtatttgttcgcctgtacctatactccactgaaaaccacgtcgaatcacatctttagcactccaaatactacgccaaacataagtaggattatg |
185895 |
T |
|
| Q |
317 |
gcctatgct |
325 |
Q |
| |
|
||| ||||| |
|
|
| T |
185894 |
gccaatgct |
185886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0607 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0607
Description:
Target: scaffold0607; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 4725 - 4417
Alignment:
| Q |
18 |
atcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaa-aaagtattaatgagctccatgttccattgtttctgg |
116 |
Q |
| |
|
|||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| | ||| ||| |
|
|
| T |
4725 |
atcatgagttgccgaaggaaggaacaaagtgttaaaaatatttctagcagtgacagtctcaaagaaagtattaatgagctccatattccactatttatgg |
4626 |
T |
|
| Q |
117 |
ggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatccc |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4625 |
ggtgtaatcaacaagtcagaaacagtgatggatggccactccaagtgatgatgagttgatggtaaaattcatgcaacattactgatccaagggtgatccc |
4526 |
T |
|
| Q |
217 |
aaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggattatg |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4525 |
aaactggtatgtgttcgcctatacctatactccactaaaaatcacgccaaatcacatctttagccctccaaatactacgccaaacataactaggattatg |
4426 |
T |
|
| Q |
317 |
gcctatgct |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
4425 |
acctatgct |
4417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 43019438 - 43019748
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaa-agtattaatgagctccatgttccattgtttct |
114 |
Q |
| |
|
||||||||||||||| |||| | |||||||| ||||||||||| |||||||| || ||||||||| || |||||| | |||||| ||||||||||| | |
|
|
| T |
43019438 |
acatcatgagttaccaaagggaataacggagtattaaaaatattcttagcagtagcattgtcaaaaagagcattaattaactccatattccattgttttt |
43019537 |
T |
|
| Q |
115 |
ggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatc |
214 |
Q |
| |
|
|||||| || ||||||||||||||||||||| |||| ||||||||| | |||||||| || |||||||||||||| ||||||| | ||| |||||||| |
|
|
| T |
43019538 |
ggggtgtaaccaacaagtcagaaacagtgatagatggccactccaaatgatgatgaggagactgtaaaattcgtgcagcattactaagccatgggtgatc |
43019637 |
T |
|
| Q |
215 |
ccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggatta |
314 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||| ||||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
43019638 |
ccaaactgaaatgtgttcccctgtgcctatactccactgaaaaccacgacgaatcacgtctttggcactccatatgctacgccaaacataactaggatta |
43019737 |
T |
|
| Q |
315 |
tggcctatgct |
325 |
Q |
| |
|
||||||||||| |
|
|
| T |
43019738 |
tggcctatgct |
43019748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 51192955 - 51193265
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaagt-attaatgagctccatgttccattgtttct |
114 |
Q |
| |
|
|||||||||||||||||||| | | ||||| ||||||||||||||||||||| || |||||||||| |||||| |||||||| ||||||||||| | |
|
|
| T |
51192955 |
acatcatgagttaccgaagggaatagtggagtattaaaaatatttctagcagtagcactgtcaaaaaaaacattaattagctccatattccattgttttt |
51193054 |
T |
|
| Q |
115 |
ggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatc |
214 |
Q |
| |
|
|| ||| || |||||| | |||||| || || |||| ||||||||| | ||||||||| || ||||||||||||| |||| |||| ||| ||||| || |
|
|
| T |
51193055 |
ggtgtgtaaccaacaaattagaaacggtaatagatggccactccaaatgatgatgagtagacggtaaaattcgtgttgcattcctgagccatgggtgctc |
51193154 |
T |
|
| Q |
215 |
ccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggatta |
314 |
Q |
| |
|
|||||||| |||||||| ||| | ||||| ||||||||||||||||| ||||||| || ||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
51193155 |
ccaaactgaaatgtgttctcctatgcctatgctccactgaaaaccacggcgaatcacatatttggcactccatatgctacgccaaacataactaggatta |
51193254 |
T |
|
| Q |
315 |
tggcctatgct |
325 |
Q |
| |
|
||||||||||| |
|
|
| T |
51193255 |
tggcctatgct |
51193265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 193 - 325
Target Start/End: Complemental strand, 21688691 - 21688559
Alignment:
| Q |
193 |
cattactgatccaagggtgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatact |
292 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| ||||||| |||||| |||||||| ||||| |
|
|
| T |
21688691 |
cattactgagtcatgggtgatcccaaactggaatgtgttctcctgtgccaatactccactgaaaaccacggcgaatcacatctttggcactccatatact |
21688592 |
T |
|
| Q |
293 |
acgccaaacataactaggattatggcctatgct |
325 |
Q |
| |
|
| |||| |||||||||||||||||||||||||| |
|
|
| T |
21688591 |
atgccatacataactaggattatggcctatgct |
21688559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 293
Target Start/End: Complemental strand, 13441117 - 13440953
Alignment:
| Q |
129 |
aagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatcccaaactggtatgt |
228 |
Q |
| |
|
|||||| |||||||||| || ||||||||| | ||||||||| || | | |||||||||||||||||||| ||| || |||| |||||||||||| | |
|
|
| T |
13441117 |
aagtcaaaaacagtgatatgtggccactccaaatgatgatgagtagacaggacaattcgtgcaacattactgagccatggatgattccaaactggtatat |
13441018 |
T |
|
| Q |
229 |
gttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatacta |
293 |
Q |
| |
|
|||| |||| ||| |||||||| ||||| ||| |||||| | |||| ||||||||||||||| |
|
|
| T |
13441017 |
gttcaactgtgcctttactccacataaaactacgatgaatcacacctttcgcactccaaatacta |
13440953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 23770858 - 23771169
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtc--aaaaaagtattaatgagctccatgttccattgtttc |
113 |
Q |
| |
|
|||||||||||||||||||| | |||||||| ||||||||||||||||| || | |||| ||||||| |||||||||||| || ||||||||||| |
|
|
| T |
23770858 |
acatcatgagttaccgaagggaataacggagtattaaaaatatttctagctatagtattgtcaaaaaaaagcattaatgagctcaatattccattgtttt |
23770957 |
T |
|
| Q |
114 |
tggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgat |
213 |
Q |
| |
|
||||||| || |||||||||||||| ||||| |||| ||| |||| | |||||||| || ||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
23770958 |
tggggtgtaactaacaagtcagaaaccgtgatagatggccatcccaaatgatgatgagaagacggtaaaattcgtgcagcattactgagccatgggtgat |
23771057 |
T |
|
| Q |
214 |
cccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggatt |
313 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||| |||||| |||||||| || ||||||||||||||||||| ||| |
|
|
| T |
23771058 |
cccaaactggaatgtgttctcctgtgcctatactccattgaaaaccacgacgaatcacatctttggcactccatatgctacgccaaacataactagaatt |
23771157 |
T |
|
| Q |
314 |
atggcctatgct |
325 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23771158 |
atggcctatgct |
23771169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 78 - 300
Target Start/End: Complemental strand, 10212808 - 10212586
Alignment:
| Q |
78 |
aaaaaagtattaatgagctccatgttccattgtttctggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaag |
177 |
Q |
| |
|
||||||| ||||| || ||||| ||||||||||| | | || || |||||||||||||||| |||| | ||| ||||| | ||||||||| | | |
|
|
| T |
10212808 |
aaaaaagcattaactagatccatattccattgtttttaagatgtaaccaacaagtcagaaacaatgatatgcggccattccaaatgatgatgagtacacg |
10212709 |
T |
|
| Q |
178 |
gtaaaattcgtgcaacattactgatccaagggtgatcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatcttt |
277 |
Q |
| |
|
||| |||||||||| ||||||||| ||| || |||| |||||||||||| ||||| ||| ||||||||||||||||||||||| | ||||||| |||||| |
|
|
| T |
10212708 |
gtacaattcgtgcagcattactgagccatggatgattccaaactggtatatgttcacctatacctatactccactgaaaaccatgacgaatcacatcttt |
10212609 |
T |
|
| Q |
278 |
agcactccaaatactacgccaaa |
300 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10212608 |
cacactccaaatactacgccaaa |
10212586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 40075344 - 40075380
Alignment:
| Q |
283 |
tccaaatactacgccaaacataactaggattatggcc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40075344 |
tccaaatactacgccaaacataactaggattatggcc |
40075380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 322
Target Start/End: Complemental strand, 10212062 - 10212033
Alignment:
| Q |
293 |
acgccaaacataactaggattatggcctat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10212062 |
acgccaaacataactaggattatggcctat |
10212033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 21 - 325
Target Start/End: Complemental strand, 55523 - 55218
Alignment:
| Q |
21 |
atgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaa-gtattaatgagctccatgttccattgtttctggggt |
119 |
Q |
| |
|
||||||||||||||| | ||| |||| ||||||||||||||||||||| || | |||||||| | |||||| |||||||| ||||||||||| || ||| |
|
|
| T |
55523 |
atgagttaccgaagggaataacagagtattaaaaatatttctagcagtatcattatcaaaaaaagcattaattagctccatattccattgtttttgcggt |
55424 |
T |
|
| Q |
120 |
gcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtgatcccaaa |
219 |
Q |
| |
|
| || ||||||||||||||||||||| |||| ||||||||| | ||||||||| || || ||||||||||| ||||| || ||| || |||||||||| |
|
|
| T |
55423 |
gtaaccaacaagtcagaaacagtgatagatggccactccaaatgatgatgagtagacagttaaattcgtgcatcattattgggccatggctgatcccaaa |
55324 |
T |
|
| Q |
220 |
ctggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggattatggcc |
319 |
Q |
| |
|
|||| || ||||| | ||| ||||||||||||||||||||||| ||||||| |||||| |||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
55323 |
ctggaatatgttctcttgtgcctatactccactgaaaaccacgacgaatcacatctttggcactccatatgcaacgccaaacataactaggattatggcc |
55224 |
T |
|
| Q |
320 |
tatgct |
325 |
Q |
| |
|
|||||| |
|
|
| T |
55223 |
tatgct |
55218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 215521 - 215209
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaagta---ttaatgagctccatgttccattgttt |
112 |
Q |
| |
|
|||||||||||||||||||| | |||||||| |||||||||||||||||||| | ||| |||||| | ||||| |||||||| ||||||||||| |
|
|
| T |
215521 |
acatcatgagttaccgaagggaataacggagtaataaaaatatttctagcagtagaattgtaaaaaaaaaaacattaattagctccatattccattgttt |
215422 |
T |
|
| Q |
113 |
ctggggtgcaatcaacaagtcagaaacagtgatggatgaccactccaattaatgatgagttgaaggtaaaattcgtgcaacattactgatccaagggtga |
212 |
Q |
| |
|
|||||| || ||||||||||||||| ||||| |||| || ||||| | ||||||||| | |||||||||||||| |||||||| ||| |||||| |
|
|
| T |
215421 |
tcggggtgtaaccaacaagtcagaaaccgtgatagatggtcattccaaatgatgatgagtaaacagtaaaattcgtgcagtattactgagccatgggtga |
215322 |
T |
|
| Q |
213 |
tcccaaactggtatgtgttcgcctgtacctatactccactgaaaaccacgccgaatcaaatctttagcactccaaatactacgccaaacataactaggat |
312 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||| ||||| |||||||| || |||||||||||||||||||||| |
|
|
| T |
215321 |
tcccaaactggaatgtgttctcctgtgcctatactccactgaaaaccacgacgaatcacgtctttggcactccatatgctacgccaaacataactaggat |
215222 |
T |
|
| Q |
313 |
tatggcctatgct |
325 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
215221 |
tatgacctatgct |
215209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 28020 - 28104
Alignment:
| Q |
16 |
acatcatgagttaccgaaggaagcaacggagtgttaaaaatatttctagcagtaacagtgtcaaaaaagtattaatgagctccat |
100 |
Q |
| |
|
||||||||||| ||||||| | |||||||| |||||||||||| ||||||||||| ||| |||||| |||||| |||||||| |
|
|
| T |
28020 |
acatcatgagtaaccgaagataataacggagtattaaaaatatttttagcagtaacattgtaaaaaaaaaattaattagctccat |
28104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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