View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11701_low_22 (Length: 329)

Name: NF11701_low_22
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11701_low_22
NF11701_low_22
[»] chr1 (18 HSPs)
chr1 (19-329)||(9109529-9109826)
chr1 (198-329)||(7482524-7482656)
chr1 (198-329)||(37168040-37168171)
chr1 (192-329)||(37033361-37033498)
chr1 (192-294)||(41135599-41135700)
chr1 (192-329)||(37879199-37879336)
chr1 (192-327)||(47114917-47115051)
chr1 (192-329)||(193355-193491)
chr1 (183-286)||(19754278-19754380)
chr1 (192-329)||(11348441-11348578)
chr1 (192-328)||(28242133-28242268)
chr1 (192-329)||(29135991-29136127)
chr1 (183-294)||(12318760-12318870)
chr1 (192-329)||(34603319-34603456)
chr1 (192-329)||(42298263-42298400)
chr1 (192-328)||(19752430-19752565)
chr1 (192-329)||(47255628-47255759)
chr1 (258-294)||(10157397-10157433)
[»] chr5 (12 HSPs)
chr5 (183-329)||(316509-316653)
chr5 (192-328)||(33906317-33906452)
chr5 (192-329)||(40147004-40147141)
chr5 (192-329)||(35615915-35616051)
chr5 (192-329)||(28278058-28278196)
chr5 (192-329)||(213211-213349)
chr5 (203-329)||(27015275-27015401)
chr5 (242-329)||(10055044-10055131)
chr5 (192-286)||(5057834-5057927)
chr5 (21-74)||(4160635-4160688)
chr5 (242-326)||(16642216-16642298)
chr5 (242-286)||(30793025-30793069)
[»] chr4 (26 HSPs)
chr4 (192-329)||(8647881-8648018)
chr4 (204-329)||(22883053-22883177)
chr4 (204-329)||(22934717-22934841)
chr4 (192-329)||(8665150-8665287)
chr4 (204-329)||(33989606-33989730)
chr4 (192-329)||(379122-379259)
chr4 (192-329)||(6655699-6655836)
chr4 (192-286)||(40630771-40630864)
chr4 (192-329)||(55085653-55085790)
chr4 (227-328)||(25723539-25723640)
chr4 (192-328)||(35662186-35662322)
chr4 (192-329)||(41964160-41964295)
chr4 (218-329)||(50263012-50263123)
chr4 (229-328)||(41961152-41961250)
chr4 (192-329)||(26364008-26364145)
chr4 (192-329)||(50674134-50674271)
chr4 (205-329)||(35369740-35369864)
chr4 (205-329)||(35370638-35370762)
chr4 (242-329)||(2209451-2209538)
chr4 (213-329)||(33089642-33089758)
chr4 (242-329)||(38811417-38811503)
chr4 (183-329)||(46703244-46703389)
chr4 (22-103)||(32091453-32091534)
chr4 (192-286)||(34112398-34112492)
chr4 (200-329)||(3785834-3785962)
chr4 (242-329)||(27417289-27417376)
[»] scaffold0002 (2 HSPs)
scaffold0002 (204-329)||(490745-490869)
scaffold0002 (21-94)||(490432-490508)
[»] chr3 (19 HSPs)
chr3 (189-286)||(35138991-35139087)
chr3 (227-325)||(39127306-39127404)
chr3 (200-325)||(34795617-34795741)
chr3 (192-329)||(6095887-6096024)
chr3 (192-329)||(46860214-46860351)
chr3 (192-328)||(40913082-40913219)
chr3 (189-329)||(54593448-54593588)
chr3 (192-276)||(5434165-5434249)
chr3 (198-329)||(43404027-43404158)
chr3 (203-329)||(47303995-47304120)
chr3 (192-329)||(36018594-36018731)
chr3 (192-280)||(4569744-4569831)
chr3 (242-329)||(28074360-28074446)
chr3 (192-329)||(49199758-49199896)
chr3 (192-329)||(30235868-30236005)
chr3 (192-329)||(43402078-43402215)
chr3 (192-329)||(55302253-55302390)
chr3 (19-100)||(35138815-35138896)
chr3 (44-92)||(1683462-1683510)
[»] chr2 (11 HSPs)
chr2 (204-329)||(42261910-42262034)
chr2 (192-328)||(30218322-30218457)
chr2 (192-329)||(45726673-45726809)
chr2 (192-329)||(42288398-42288534)
chr2 (192-329)||(1632020-1632157)
chr2 (267-328)||(24197643-24197704)
chr2 (21-101)||(30218156-30218236)
chr2 (203-286)||(35447183-35447265)
chr2 (21-94)||(42261597-42261673)
chr2 (192-328)||(24397801-24397938)
chr2 (189-229)||(43730991-43731031)
[»] scaffold0197 (1 HSPs)
scaffold0197 (192-329)||(1694-1830)
[»] chr7 (17 HSPs)
chr7 (192-329)||(4512678-4512814)
chr7 (183-286)||(8359597-8359699)
chr7 (192-329)||(6431714-6431851)
chr7 (192-329)||(34311004-34311141)
chr7 (192-329)||(5116378-5116515)
chr7 (21-101)||(1360264-1360344)
chr7 (198-329)||(22328692-22328824)
chr7 (189-329)||(29608484-29608619)
chr7 (192-316)||(4508994-4509117)
chr7 (192-316)||(4510836-4510959)
chr7 (189-329)||(22269718-22269856)
chr7 (204-329)||(2361271-2361396)
chr7 (192-286)||(48599622-48599715)
chr7 (192-286)||(2390069-2390162)
chr7 (192-329)||(3258739-3258876)
chr7 (203-329)||(43363713-43363837)
chr7 (192-236)||(6360200-6360244)
[»] scaffold0466 (1 HSPs)
scaffold0466 (192-329)||(7071-7208)
[»] chr8 (10 HSPs)
chr8 (192-329)||(42435279-42435416)
chr8 (202-292)||(40585506-40585595)
chr8 (203-329)||(40221488-40221614)
chr8 (192-329)||(40328522-40328659)
chr8 (213-329)||(2999829-2999945)
chr8 (192-329)||(11383729-11383866)
chr8 (21-72)||(11137031-11137082)
chr8 (193-271)||(9633826-9633904)
chr8 (254-328)||(28461305-28461379)
chr8 (48-100)||(7444956-7445008)
[»] scaffold0014 (1 HSPs)
scaffold0014 (198-286)||(80577-80664)
[»] chr6 (7 HSPs)
chr6 (192-329)||(5043371-5043507)
chr6 (192-329)||(603368-603505)
chr6 (192-329)||(21593409-21593546)
chr6 (198-329)||(17762730-17762863)
chr6 (203-329)||(3809007-3809134)
chr6 (198-329)||(17757825-17757958)
chr6 (48-101)||(25073545-25073598)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 9109529 - 9109826
Alignment:
Q  19 aacttcaacaagttctccaagtaaaaacttaatttcttccattttctcaatctcctaccatgaacaagacactcaaggatttcgcagccaaaatgtaagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9109529 aacttcaacaagttctccaagtaaaaacttaatttcttccattttctcaatctcctaccatgaacaagacactcaaggatttcgcagccaaaatgtaagt 9109628  T
Q  119 ttaattgctttttaactatagaatccaaccattagtctttgattacctcatgatcttctattttgatttcctattttgatttcccaagactcatccaaat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||    
T  9109629 ttaattgctttttaactatagaatccaaccattagtctttgattacctcatgatctt-------------ctattttgatttcccaagactcatccaaat 9109715  T
Q  219 tgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtccccctttttggttctcca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  9109716 tgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaagacatcaaccctctcccatgagtccccttttttggttctcca 9109815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 329
Target Start/End: Original strand, 7482524 - 7482656
Alignment:
Q  198 tttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatctcccatg 296  Q
    |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||| ||||||||||||| ||| || | ||||| |    
T  7482524 tttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaacccttttcccaag 7482622  T
Q  297 agtccccct-ttttggttctccaagattcacatc 329  Q
    || |||||| ||||||||||||||||||||||||    
T  7482623 agcccccctcttttggttctccaagattcacatc 7482656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 329
Target Start/End: Complemental strand, 37168171 - 37168040
Alignment:
Q  198 tttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatctcccatg 296  Q
    |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||| ||||||||||||| ||| || | ||||| |    
T  37168171 tttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaacccttttcccaag 37168073  T
Q  297 agtccccctttttggttctccaagattcacatc 329  Q
    || ||||  ||||||||||||||||||||||||    
T  37168072 agccccctcttttggttctccaagattcacatc 37168040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 37033361 - 37033498
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| ||||||||| |||| ||||||||||| |||||||   | |||||| |||||||||||||||||| ||| ||||||||| ||| || | |    
T  37033361 ttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccaacctcatgaatct-tcctcaaaaggcaccaaccctttt 37033459  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| ||||  ||||||||||||||||||||||||    
T  37033460 cccaagagccccctcttttggttctccaagattcacatc 37033498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 294
Target Start/End: Complemental strand, 41135700 - 41135599
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| ||||| |||||||| |||| || |||||||| ||||||| |||||||||| |||||||| |||||||||||||| |||||||| ||||| ||||    
T  41135700 ttttggtttcctaagactcacccaagtttctcacaaa-gactctcctttgatgtgtttcccaaccccatgaatctctccctaaaaggcaccaaccctctc 41135602  T
Q  292 cca 294  Q
    |||    
T  41135601 cca 41135599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 37879199 - 37879336
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaacc-atct 290  Q
    |||||||||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||| | ||||||||||||| |||||  | |    
T  37879199 ttttgatttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaat-tttccccaaaaggcaccaaccttttt 37879297  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    | || ||| ||||  |||| |||||||||||||||||||    
T  37879298 cacaagagccccctctttttgttctccaagattcacatc 37879336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 327
Target Start/End: Complemental strand, 47115051 - 47114917
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccat-ct 290  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||  || |||||| |||||||| ||||||  ||| ||||||||| | ||||| |  |    
T  47115051 ttttggtttcacaagactcacccaagttgctcacaaaagactctccattcatgtgtttcccaaccccatgaa--tcttcccaaaaggtaccaaccctgtt 47114954  T
Q  291 cccatgagtccccctttttggttctccaagattcaca 327  Q
    |||| ||| ||||  ||||||||||||||||||||||    
T  47114953 cccaagagccccctcttttggttctccaagattcaca 47114917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 193491 - 193355
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct- 290  Q
    ||||| |||| |||||||||||||| ||||||||||||||||||      |||||| |||||||| ||||||  ||| ||||||||||| ||||| | |     
T  193491 ttttggtttcacaagactcatccaagttgctcacaaaagactcttcacacatgtgtttcccaaccccatgaa--tcttcccaaaaggcaccaaccttttc 193394  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| ||||  ||||||||||||||||||||||||    
T  193393 cccaagagccccctcttttggttctccaagattcacatc 193355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 19754380 - 19754278
Alignment:
Q  183 gatttcctattttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatc 282  Q
    ||||| || ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||| ||||||||||||| |    
T  19754380 gattttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcacc 19754282  T
Q  283 aacc 286  Q
    ||||    
T  19754281 aacc 19754278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 11348578 - 11348441
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatca-accatct 290  Q
    ||||| |||| ||||||||| |||| ||||||||||| |||||||   | |||||| | |||||| ||||||||| || |||||||||| || ||| | |    
T  11348578 ttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgttttccaaccccatgaatct-tctccaaaaggcaccagacctttt 11348480  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| ||||  ||||||||||||||||||||||||    
T  11348479 cccaagagccccctcttttggttctccaagattcacatc 11348441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 328
Target Start/End: Complemental strand, 28242268 - 28242133
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| ||||||||| |||| ||||||||||| |||||||   | |||||| ||||||||| |||||  ||| ||||||||||| ||| || | |    
T  28242268 ttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccaaccttatgaa--tcttcccaaaaggcaccaaccctttt 28242171  T
Q  291 cccatgagtccccctttttggttctccaagattcacat 328  Q
    |||| ||| ||||  |||||||||||||||||||||||    
T  28242170 cccaagagccccctcttttggttctccaagattcacat 28242133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 29136127 - 29135991
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct- 290  Q
    ||||| |||| ||||||||| |||| |||||||||||| ||||||   | |||| | ||| |||| ||||||||| ||||||||||||| ||||| | |     
T  29136127 ttttggtttcacaagactcacccaagttgctcacaaaaaactctccactcatgtttttcc-aaccccatgaatct-tccccaaaaggcaccaaccctttt 29136030  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||||||||  ||||||||||||||||||||||||    
T  29136029 cccaagagtcccctcttttggttctccaagattcacatc 29135991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 294
Target Start/End: Original strand, 12318760 - 12318870
Alignment:
Q  183 gatttcctattttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatc 282  Q
    ||||| |||||||| | |||||||||||| |||| ||||||| |||| |||||| |||||||||| || ||| |  |||||  ||||||||||||||| |    
T  12318760 gattttctattttggtctcccaagactcacccaagttgctcataaaa-actctcctttgatgtgtttctcaatcctatgaacttctccccaaaaggcacc 12318858  T
Q  283 aaccatctccca 294  Q
    |||| |||||||    
T  12318859 aaccctctccca 12318870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 34603456 - 34603319
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct- 290  Q
    ||||| |||| ||||||||| |||| |||||||||||||||| |    | |||||| | |||||| ||||||||| ||||||||||||| ||||| | |     
T  34603456 ttttggtttcacaagactcacccaagttgctcacaaaagacttttcactcatgtgttttccaaccccatgaatct-tccccaaaaggcaccaaccctttt 34603358  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| |||  |||  ||||||||||||||||||||||||    
T  34603357 cccaagagctccctcttttggttctccaagattcacatc 34603319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 42298263 - 42298400
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| |||| |||||| |||| |||||||   | |||||| |||||||| ||||||||| || |||||||||| ||||| | |     
T  42298263 ttttggtttcacaagactcacccaagttgctcgcaaatgactctccactcatgtgtttcccaaccccatgaatct-tctccaaaaggcaccaaccctttt 42298361  T
Q  292 c-catgagtccccctttttggttctccaagattcacatc 329  Q
    | || ||| ||||  ||||||||||||||||||||||||    
T  42298362 cacaagagccccctcttttggttctccaagattcacatc 42298400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 328
Target Start/End: Complemental strand, 19752565 - 19752430
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||||| || |||||||||||| ||||||   | |||||| |||||||   |||||||| ||||||||||||| ||||| | ||    
T  19752565 ttttggtttcacaagactcatctaagttgctcacaaaatactctccactcatgtgtttcccaactcaatgaatct-tccccaaaaggcaccaaccttttc 19752467  T
Q  292 ccatgagtccccctttttggttctccaagattcacat 328  Q
      | ||| |||   |||||||||||||||||||||||    
T  19752466 ataagagccccatcttttggttctccaagattcacat 19752430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 47255628 - 47255759
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| | || |||||||||||||||||||   | |||||| |||||||| ||||||||| ||||||||||||| ||    | ||    
T  47255628 ttttggtttcacaagactca-ctaagttgctcacaaaagactctccaatcatgtgtttcccaacc-catgaatct-tccccaaaaggcacca---ttttc 47255721  T
Q  292 ccatgagtccccctttttggttctccaagattcacatc 329  Q
    ||| ||| |||   ||||||||||||||||||||||||    
T  47255722 ccaagagccccatcttttggttctccaagattcacatc 47255759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 10157433 - 10157397
Alignment:
Q  258 catgaatctctccccaaaaggcatcaaccatctccca 294  Q
    |||||||||||||||||||| |||||||||| |||||    
T  10157433 catgaatctctccccaaaagtcatcaaccatttccca 10157397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 183 - 329
Target Start/End: Complemental strand, 316653 - 316509
Alignment:
Q  183 gatttcctattttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatc 282  Q
    ||||| || ||||| | |||||||| ||| |||| ||||||||||| ||||||| |||||||||| ||||||||| |||||||||||||||||||||| |    
T  316653 gattttctcttttggtctcccaagattca-ccaagttgctcacaaa-gactctcttttgatgtgtttcccaaccttatgaatctctccccaaaaggcacc 316556  T
Q  283 aaccatctcccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||||||| ||| ||||| ||||||||||||||||||||||||    
T  316555 aaccctctcccaagagcccccccttttggttctccaagattcacatc 316509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 192 - 328
Target Start/End: Original strand, 33906317 - 33906452
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||||||||||||| |||| |||||||| || | ||||| |||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||    
T  33906317 ttttggtttcccaagactcacccaagttgctcactaa-gtctctcctttgatgtgtttctcaaccccatgaatctctccccaaaaggcaccaaccctctc 33906415  T
Q  292 ccatgagtccccctttttggttctccaagattcacat 328  Q
    ||| ||| |||| ||||||||||| ||||||||||||    
T  33906416 ccaagagcccccttttttggttctacaagattcacat 33906452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 40147141 - 40147004
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaacca-tct 290  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||| ||||||||||||| |||||| | |    
T  40147141 ttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaaccatttt 40147043  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| ||||  ||||||||||||||||||||||||    
T  40147042 cccaagagccccctcttttggttctccaagattcacatc 40147004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 35616051 - 35615915
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||||||||||||| | || ||| | ||||| ||||||  ||| |||||| || ||||  |||||||||||||||||||||||||| || | ||    
T  35616051 ttttggtttcccaagactcaccaaagttgattacaaa-gactcttcttttatgtgtttctcaactccatgaatctctccccaaaaggcatcacccctttc 35615953  T
Q  292 ccatgagtccccctttttggttctccaagattcacatc 329  Q
    ||| ||||||||  ||||||||||||||||||||||||    
T  35615952 ccaagagtcccctcttttggttctccaagattcacatc 35615915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 28278196 - 28278058
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct- 290  Q
    |||||||||| ||||||||| |||| |||||||||| || |||||   | |||||| |||||||| ||||||||| ||||||||||||| ||||| | |     
T  28278196 ttttgatttcacaagactcacccaagttgctcacaatagtctctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaaccctttt 28278098  T
Q  291 cccatgagtccccct-ttttggttctccaagattcacatc 329  Q
    |||| ||| |||||| ||||||||||||||||||||||||    
T  28278097 cccaagagcccccctcttttggttctccaagattcacatc 28278058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 213349 - 213211
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||| || |||||||||| ||| || | |    
T  213349 ttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tctccaaaaggcaccaaccctttt 213251  T
Q  291 cccatgagtccccctttttggttct-ccaagattcacatc 329  Q
    |||| ||| ||||  |||||||||| ||||||||||||||    
T  213250 cccaagagccccctcttttggttctcccaagattcacatc 213211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 329
Target Start/End: Complemental strand, 27015401 - 27015275
Alignment:
Q  203 caagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcc-catgagtcc 301  Q
    ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||| ||| ||||||||||||| ||||| | | | || ||| ||    
T  27015401 caagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgattct-tccccaaaaggcaccaacccttttcacaagagccc 27015303  T
Q  302 ccctttttggttctccaagattcacatc 329  Q
    ||  |||||||||| |||||||||||||    
T  27015302 cctcttttggttcttcaagattcacatc 27015275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 10055044 - 10055131
Alignment:
Q  242 atgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||||| |||||||| | |||||||||||||| |||||| ||| | | ||||| ||| || |  ||||||||||||||||||||||||    
T  10055044 atgtgtttcccaaccccgtgaatctctccccataaggcaccaaacctttcccaagagccctctcttttggttctccaagattcacatc 10055131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 5057927 - 5057834
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaacc 286  Q
    ||||| |||| ||||||||  |||| ||||||||||| |||||||   | |||||| | |||||| ||||||||| ||||||||||||| |||||    
T  5057927 ttttggtttcacaagactcgcccaagttgctcacaaatgactctccactcatgtgttttccaaccccatgaatct-tccccaaaaggcaccaacc 5057834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 4160688 - 4160635
Alignment:
Q  21 cttcaacaagttctccaagtaaaaacttaatttcttccattttctcaatctcct 74  Q
    ||||||||||||||||||| | |||| |||||||| ||||||||  ||||||||    
T  4160688 cttcaacaagttctccaagaacaaacctaatttctaccattttccaaatctcct 4160635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 326
Target Start/End: Original strand, 16642216 - 16642298
Alignment:
Q  242 atgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtccccctttttggttctccaagattcac 326  Q
    |||||| ||| |||| ||||||||| ||||||||||||| ||||| | ||||| |||  |||  |||||||||| ||||||||||    
T  16642216 atgtgtttcctaaccccatgaatctgtccccaaaaggcaccaaccctttcccaagag--ccctcttttggttcttcaagattcac 16642298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 30793069 - 30793025
Alignment:
Q  242 atgtgtctcccaacctcatgaatctctccccaaaaggcatcaacc 286  Q
    |||||| |||||||| ||||||| ||||||||||||||| |||||    
T  30793069 atgtgtttcccaaccccatgaatatctccccaaaaggcaccaacc 30793025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 8648018 - 8647881
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    |||||||||| ||||||||| |||| |||||||||||||||||||   |  ||||| |||||||| ||||||||| ||||||||||||| ||| || | |    
T  8648018 ttttgatttcacaagactcacccaagttgctcacaaaagactctccactcctgtgtttcccaaccccatgaatct-tccccaaaaggcaccaaccctttt 8647920  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| ||||  ||||||||||||||||||||||||    
T  8647919 cccaagagccccctcttttggttctccaagattcacatc 8647881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 204 - 329
Target Start/End: Original strand, 22883053 - 22883177
Alignment:
Q  204 aagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtcccc 303  Q
    |||||||  |||||||||||||||| |||||||||||||||||| ||| ||||  |||| |||||| |||||||| |||| || ||||||| ||| ||||    
T  22883053 aagactcgcccaaattgctcacaaa-gactctcatttgatgtgtttcctaaccctatgagtctctctccaaaaggtatcagccctctcccaagagccccc 22883151  T
Q  304 ctttttggttctccaagattcacatc 329  Q
      |||| |||||||||||||||||||    
T  22883152 tctttttgttctccaagattcacatc 22883177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 204 - 329
Target Start/End: Original strand, 22934717 - 22934841
Alignment:
Q  204 aagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtcccc 303  Q
    |||||||  |||||||||||||||| |||||||||||||||||| ||| ||||  |||| |||||| |||||||| |||| || ||||||| ||| ||||    
T  22934717 aagactcgcccaaattgctcacaaa-gactctcatttgatgtgtttcctaaccctatgagtctctctccaaaaggtatcagccctctcccaagagccccc 22934815  T
Q  304 ctttttggttctccaagattcacatc 329  Q
      |||| |||||||||||||||||||    
T  22934816 tctttttgttctccaagattcacatc 22934841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 8665287 - 8665150
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||   |  ||||| |||||||| ||||||||| ||||||||||||| ||| || | |    
T  8665287 ttttggtttcacaagactcacccaagttgctcacaaaagactctccactcctgtgtttcccaaccccatgaatct-tccccaaaaggcaccaaccctttt 8665189  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| ||||  ||||||||||||||||||||||||    
T  8665188 cccaagagccccctcttttggttctccaagattcacatc 8665150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 329
Target Start/End: Complemental strand, 33989730 - 33989606
Alignment:
Q  204 aagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtcccc 303  Q
    |||||||| |||| ||||||||||| |||||||   | |||||| |||||| | |||||||||||||| |||||||| ||||| ||||||| ||| ||||    
T  33989730 aagactcacccaagttgctcacaaatgactctccactcatgtgtttcccaatcccatgaatctctccc-aaaaggcaccaaccttctcccaagagccccc 33989632  T
Q  304 ctttttggttctccaagattcacatc 329  Q
      |||||||||| |||||||||||||    
T  33989631 tattttggttcttcaagattcacatc 33989606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 379259 - 379122
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatc-aaccatct 290  Q
    |||||||||| ||||||||| |||| ||||||||||| |||||||   | |||||| |||||  ||||||||||| ||||||||||||| | | || | |    
T  379259 ttttgatttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccattctcatgaatct-tccccaaaaggcaccgaccctttt 379161  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    | || ||| ||||  ||||||||||||||||||||||||    
T  379160 cacaagagccccctcttttggttctccaagattcacatc 379122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 6655836 - 6655699
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| |||| ||||||| ||| |||||||   | |||||| |||||||| ||||||||| || |||||||||| ||||| | ||    
T  6655836 ttttggtttcacaagactcacccaagttgctcagaaatgactctccactcatgtgtttcccaaccccatgaatct-tctccaaaaggcaccaaccctttc 6655738  T
Q  292 cc-atgagtccccctttttggttctccaagattcacatc 329  Q
    || | ||| ||||  ||||||||||||||||||||||||    
T  6655737 cccaagagccccctcttttggttctccaagattcacatc 6655699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 40630864 - 40630771
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaacc 286  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||| ||||||||||||| |||||    
T  40630864 ttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaacc 40630771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 55085653 - 55085790
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct- 290  Q
    ||||| |||| |||||||||  ||| ||||||||||| |||||||   | |||||| |||||||| ||||||||| ||||||||||||| ||||| | |     
T  55085653 ttttggtttcacaagactcacacaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaaccctttc 55085751  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| ||||  |||||||||||||||||| |||||    
T  55085752 cccaagagccccctcttttggttctccaagatttacatc 55085790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 25723539 - 25723640
Alignment:
Q  227 aaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtccccctttttggttctccaagattcac 326  Q
    |||||||||| |||||||||| |||||||| || ||| ||||| ||||||||||| ||||||   ||| |||  |||  |||||||||||||||||||||    
T  25723539 aaagactctcttttgatgtgtttcccaaccccacgaagctctctccaaaaggcattaaccattatccaagagctccctcttttggttctccaagattcac 25723638  T
Q  327 at 328  Q
    ||    
T  25723639 at 25723640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 328
Target Start/End: Complemental strand, 35662322 - 35662186
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| |||| |||||||||||  ||||||  || |||||| | |||||| ||||||||| ||||||||||||| ||||| | |     
T  35662322 ttttggtttcacaagactcacccaagttgctcacaaagaactctccattcatgtgttttccaaccccatgaatct-tccccaaaaggcaccaaccctttt 35662224  T
Q  292 cc-atgagtccccctttttggttctccaagattcacat 328  Q
    || | ||| ||||  |||||||||||||||||||||||    
T  35662223 cctaagagccccctcttttggttctccaagattcacat 35662186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 41964295 - 41964160
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||| | |||||||| | | | || | ||    
T  41964295 ttttggtttcacaagactcacccaagttgctcacaaaagactctctactcatgtgtttcccaaccccatgaatct-ttcccaaaagac-taacccttttc 41964198  T
Q  292 ccatgagtccccctttttggttctccaagattcacatc 329  Q
    ||| ||| ||||  ||||||||||||||||||||||||    
T  41964197 ccaagagccccctcttttggttctccaagattcacatc 41964160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 50263012 - 50263123
Alignment:
Q  218 ttgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc-ccatgagtccccctttttggttctc 316  Q
    |||||||||||||||||||   | |||||| |||||||| ||||||||| ||||||||||||| ||||| | |  ||| ||| ||||  |||||||||||    
T  50263012 ttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaaccctttttccaagagccccctcttttggttctc 50263110  T
Q  317 caagattcacatc 329  Q
    |||||||||||||    
T  50263111 caagattcacatc 50263123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 41961250 - 41961152
Alignment:
Q  229 agactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtccccctttttggttctccaagattcacat 328  Q
    |||||||| ||| |||||| |||||||| ||||||||||||||||||| ||| | ||| ||||||  ||| |||| |||| |||||| ||||||||||||    
T  41961250 agactctcctttaatgtgtttcccaacc-catgaatctctccccaaaaagcaccgaccttctccctagagccccctttttcggttctacaagattcacat 41961152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 26364145 - 26364008
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| ||||||||| |||| ||||||||||| |||||||   | |||||| |||||||| ||||||||| || |||||||||  ||| || | |    
T  26364145 ttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatct-tctccaaaaggccccaaccctttt 26364047  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    | || ||| ||||  ||||||||||||||||||||||||    
T  26364046 cacaagagccccctcttttggttctccaagattcacatc 26364008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 50674134 - 50674271
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||| | |||| |||||| ||||| | |     
T  50674134 ttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-ttcccataaggcaccaaccctttt 50674232  T
Q  292 ccat-gagtccccctttttggttctccaagattcacatc 329  Q
    |  | ||| ||||  ||||||||||||||||||||||||    
T  50674233 cattagagccccctcttttggttctccaagattcacatc 50674271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 329
Target Start/End: Original strand, 35369740 - 35369864
Alignment:
Q  205 agactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtcccc- 303  Q
    ||||||| |||| ||||| ||||| |||| || |||||||||| ||  ||||||||||||||||  | |||||| | ||||| ||||||| ||  ||||     
T  35369740 agactcacccaagttgcttacaaa-gactatcttttgatgtgtttctaaacctcatgaatctctttcgaaaagggaccaaccctctcccaagaaccccct 35369838  T
Q  304 ctttttggttctccaagattcacatc 329  Q
    ||||| ||||||||||||||||||||    
T  35369839 cttttaggttctccaagattcacatc 35369864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 329
Target Start/End: Original strand, 35370638 - 35370762
Alignment:
Q  205 agactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtcccc- 303  Q
    ||||||| |||| ||||| ||||| ||||||| |||||||| | |  |||||||||||||||||  | |||||| | ||||| ||||||| ||  ||||     
T  35370638 agactcacccaagttgcttacaaa-gactctcctttgatgtttttatcaacctcatgaatctctttcgaaaagggaccaaccctctcccaagaaccccct 35370736  T
Q  304 ctttttggttctccaagattcacatc 329  Q
    ||||| ||||||||||||||||||||    
T  35370737 cttttaggttctccaagattcacatc 35370762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 329
Target Start/End: Complemental strand, 2209538 - 2209451
Alignment:
Q  242 atgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct-cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||||| |||||||| ||||||||| ||||||||||||| ||||| | | |||| ||||||||   |||||||||||||||||||||||    
T  2209538 atgtgtttcccaaccccatgaatct-tccccaaaaggcaccaacccttttcccaagagtcccctcgtttggttctccaagattcacatc 2209451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 329
Target Start/End: Complemental strand, 33089758 - 33089642
Alignment:
Q  213 ccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtccccctttttggt 312  Q
    |||| ||||||||||| |||||||   | |||||| |  | ||| |||||||||||| ||||||| || ||||| ||||||| ||| ||||  ||||| |    
T  33089758 ccaagttgctcacaaatgactctccactcatgtgtttttcgaccccatgaatctctctccaaaagacaccaaccctctcccaagagccccctcttttgat 33089659  T
Q  313 tctccaagattcacatc 329  Q
    |||||||||||||||||    
T  33089658 tctccaagattcacatc 33089642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 38811417 - 38811503
Alignment:
Q  242 atgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||||| ||| |||||||||||||||||| |||||| || ||||| | ||||| ||| ||||  ||| ||||||||||||||||||||    
T  38811417 atgtgtttcctaacctcatgaatctctccgcaaaagacaccaaccctttcccaagag-cccctctttgggttctccaagattcacatc 38811503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 329
Target Start/End: Complemental strand, 46703389 - 46703244
Alignment:
Q  183 gatttcctattttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatc 282  Q
    ||||| || ||||| |||| ||||||||| |||| ||||| |||||||||||||  || |||| | ||||| || ||||||||| ||||||||||||| |    
T  46703389 gattttctcttttggtttcacaagactcacccaagttgctgacaaaagactctccattcatgt-tttcccatccccatgaatct-tccccaaaaggcacc 46703292  T
Q  283 aa-ccatctcccatgagtccccctttttggttctccaagattcacatc 329  Q
    || || | ||||| ||| ||||  ||||| ||||| ||||||||||||    
T  46703291 aacccttttcccaagagccccctcttttgattctcgaagattcacatc 46703244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 32091534 - 32091453
Alignment:
Q  22 ttcaacaagttctccaagtaaaaacttaatttcttccattttctcaatctcctaccatgaacaagacactcaaggatttcgc 103  Q
    ||||||||  |||||||| | |||| ||||||||  ||||||| |||||| || |||||||||||| |||||| ||||||||    
T  32091534 ttcaacaaactctccaagaacaaacctaatttctagcattttcccaatcttctcccatgaacaagagactcaatgatttcgc 32091453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 34112492 - 34112398
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaacc 286  Q
    ||||| ||| |||||| |||||||| ||||||||| | |||||||   | |||||| | |||||| | |||| |||||||||||||||| |||||    
T  34112492 ttttgtttttccaagattcatccaagttgctcacagatgactctccactcatgtgttttccaaccccgtgaacctctccccaaaaggcaccaacc 34112398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 329
Target Start/End: Complemental strand, 3785962 - 3785834
Alignment:
Q  200 tcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagt 299  Q
    |||||||||||   ||| ||||||||||| ||||||| ||||| ||||  | | ||| ||| | ||||||| ||||||||| ||||| | | ||| |||     
T  3785962 tcccaagactcgcacaatttgctcacaaa-gactctcctttgaagtgttcctcgaccccataattctctcctcaaaaggcaccaacccttttccaagagc 3785864  T
Q  300 ccccctttttggttctccaagattcacatc 329  Q
    ||||  |||||||||| |||||||||||||    
T  3785863 cccctcttttggttcttcaagattcacatc 3785834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 27417289 - 27417376
Alignment:
Q  242 atgtgtctcccaacctcatgaatctctccccaaaaggcatcaacca-tctcccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||||| |||||||| ||||||||| |||||||||| || |||||  | ||||| ||| |||   ||||||||||||||||||||||||    
T  27417289 atgtgtttcccaaccccatgaatct-tccccaaaagacaccaacccctttcccaagagccccttcttttggttctccaagattcacatc 27417376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 204 - 329
Target Start/End: Original strand, 490745 - 490869
Alignment:
Q  204 aagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtcccc 303  Q
    |||||||  |||| ||||||| |||| |||||| |||||||||| |||||| | |||||||||||| || ||||||| ||||| ||||| | ||| ||||    
T  490745 aagactcgcccaagttgctcataaaa-actctcctttgatgtgtttcccaatcccatgaatctctcacctaaaggcaccaaccctctccaaagagccccc 490843  T
Q  304 ctttttggttctccaagattcacatc 329  Q
     |||||||||||||||||||||||||    
T  490844 ttttttggttctccaagattcacatc 490869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 490432 - 490508
Alignment:
Q  21 cttcaacaagttctccaagtaaaaacttaatttcttccattttctcaatctcctac---catgaacaagacactcaa 94  Q
    |||||||||| |||||||| | ||||||||||||| | |||||||||||||||| |   ||||||||||| ||||||    
T  490432 cttcaacaagctctccaagaacaaacttaatttctacgattttctcaatctcctcctttcatgaacaagagactcaa 490508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 35138991 - 35139087
Alignment:
Q  189 ctattttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaacc 286  Q
    |||||||| | ||||||||||||| ||| ||||||| ||| |||||||||||||| ||| | |||||||||||||||||||| |||||||||||||||    
T  35138991 ctattttggtctcccaagactcattcaagttgctcataaa-gactctcatttgatttgttttccaacctcatgaatctctcctcaaaaggcatcaacc 35139087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 227 - 325
Target Start/End: Complemental strand, 39127404 - 39127306
Alignment:
Q  227 aaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtccccctttttggttctccaagattca 325  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||| |||||||| ||||  ||| ||| ||||||||  |||| |||||| ||||||||    
T  39127404 aaagactcatatttgatgtgtttcccaacctcatgaatctctcccaaaaaggcaccaactctcttccaagagtcccctattttagttctctaagattca 39127306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 34795741 - 34795617
Alignment:
Q  200 tcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagt 299  Q
    |||||||||||| |||| || || |||||| |||||| |||||||||| |||||||| ||||||||||||| |||||||||| || | ||||||  ||      
T  34795741 tcccaagactcacccaagtttcttacaaaa-actctcctttgatgtgtatcccaaccccatgaatctctcctcaaaaggcatgaaacctctccctagaac 34795643  T
Q  300 ccccctttttggttctccaagattca 325  Q
    ||||  || |||||||||||||||||    
T  34795642 cccctcttctggttctccaagattca 34795617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 6095887 - 6096024
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| ||||||||| |||| ||||||||||| |||||||   | |||||| |||||||| ||||||||| ||||||||||||| ||| || | |    
T  6095887 ttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaaccctttt 6095985  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |  | ||| ||||  ||||||||||||||||||||||||    
T  6095986 caaaagagccccctcttttggttctccaagattcacatc 6096024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 46860351 - 46860214
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| ||||||||| |||| ||||||||||| |||||||   | |||||| ||||| ||  |||||||| ||||||||||||| ||| || | |    
T  46860351 ttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccatccctatgaatct-tccccaaaaggcaccaaccctttt 46860253  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| ||||  ||||||||||||||||||||||||    
T  46860252 cccaagagccccctcttttggttctccaagattcacatc 46860214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 328
Target Start/End: Complemental strand, 40913219 - 40913082
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| ||||||||| |||| ||||||||||| |||||||   | |||||| |||||||| |||||||||   || |||||||| ||| || | |    
T  40913219 ttttgctttcacaagactcacccaatttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaaaggcaccaaccctttt 40913120  T
Q  291 cccatgagtccccctttttggttctccaagattcacat 328  Q
    |||| ||| ||||  |||||||||||||||||||||||    
T  40913119 cccaagagccccctcttttggttctccaagattcacat 40913082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 329
Target Start/End: Complemental strand, 54593588 - 54593448
Alignment:
Q  189 ctattttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-cca 287  Q
    |||||||| |||| |||||||||  ||| |||||||||||||||||||   | |||||| | ||| || ||||||||| ||||||||||| | ||| ||     
T  54593588 ctattttggtttcacaagactcactcaagttgctcacaaaagactctccactcatgtgttttccatccccatgaatct-tccccaaaaggtaccaaccct 54593490  T
Q  288 tctcccatgagtccccctttttggttctccaagattcacatc 329  Q
    | ||||| ||| ||||  ||||||||||||||||||||||||    
T  54593489 tttcccaagagccccctcttttggttctccaagattcacatc 54593448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 5434165 - 5434249
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaa 276  Q
    ||||| |||||||||||||| |||| |||||||||||||||||||   | |||||| ||| |||| |||||||||||||| ||||    
T  5434165 ttttggtttcccaagactcacccaacttgctcacaaaagactctccactcatgtgtttcctaaccccatgaatctctccctaaaa 5434249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 329
Target Start/End: Original strand, 43404027 - 43404158
Alignment:
Q  198 tttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct-cccatg 296  Q
    |||| ||||||||| |||| |||||| |||| |||||||   | |||||| | |||||| ||||||||| ||||||||||||| ||||| | | |||| |    
T  43404027 tttcacaagactcacccaagttgctcccaaatgactctccactcatgtgttttccaaccccatgaatct-tccccaaaaggcaccaacccttttcccaag 43404125  T
Q  297 agtccccctttttggttctccaagattcacatc 329  Q
    || ||||  ||||||||||||||||||||||||    
T  43404126 agccccctcttttggttctccaagattcacatc 43404158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 329
Target Start/End: Complemental strand, 47304120 - 47303995
Alignment:
Q  203 caagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct-cccatgagtcc 301  Q
    ||||||||| | || |||||||||||| ||||||   | |||||| |||||||| ||||||||| ||||||||||||| ||||| | | |||| ||| ||    
T  47304120 caagactcacctaagttgctcacaaaa-actctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaacccttttcccaagagccc 47304023  T
Q  302 ccctttttggttctccaagattcacatc 329  Q
    ||  ||||||||||||||||||||||||    
T  47304022 cctcttttggttctccaagattcacatc 47303995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 36018731 - 36018594
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| ||||||||| |||| ||||||||||| |||||||  || |||||| ||||| || |||| |||| ||||||||||||| ||| || | |    
T  36018731 ttttggtttcacaagactcacccaagttgctcacaaatgactctccattcatgtgtttcccatccccatggatct-tccccaaaaggcaccaaccctttt 36018633  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    ||||  ||  |||  ||||||||||||||||||||||||    
T  36018632 cccaaaagctccctcttttggttctccaagattcacatc 36018594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 4569831 - 4569744
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggca 280  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||| ||||||| |||||    
T  4569831 ttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaataggca 4569744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 329
Target Start/End: Complemental strand, 28074446 - 28074360
Alignment:
Q  242 atgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||||| ||||| || ||||||||| ||||||||| ||| |||| || ||||| ||| ||||  ||||||||||||||||||||||||    
T  28074446 atgtgtttcccatccccatgaatct-tccccaaaacgcaccaactatttcccaagagccccctcttttggttctccaagattcacatc 28074360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 49199758 - 49199896
Alignment:
Q  192 ttttgatttcccaagactcatccaaa-ttgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatc 289  Q
    ||||| |||| ||||||||| || || |||||||||||||||||||   | || ||| |||||||| ||||||||| ||||||||||||| ||| || |     
T  49199758 ttttggtttcacaagactcaacccaagttgctcacaaaagactctccactcatatgtttcccaaccccatgaatct-tccccaaaaggcaccaacccttt 49199856  T
Q  290 tcccatgagtccccctttttggttctccaagattcacatc 329  Q
    || ||  || ||||  ||||||||||||||||||||||||    
T  49199857 tcacaatagccccctcttttggttctccaagattcacatc 49199896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 30236005 - 30235868
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| |||| ||||||||||| |||||||   |  ||||| | |||||| ||||||| | ||||||||||||| ||||| | |     
T  30236005 ttttggtttcacaagactcacccaacttgctcacaaatgactctccactcttgtgttttccaaccccatgaatat-tccccaaaaggcaccaaccctttt 30235907  T
Q  292 c-catgagtccccctttttggttctccaagattcacatc 329  Q
    | || ||| ||||  ||||||||||||||||||||||||    
T  30235906 cacaagagccccctcttttggttctccaagattcacatc 30235868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 43402078 - 43402215
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||| | |||| ||| ||||||| || ||||   | |||||| |||||||| ||||||||| ||||||||||||| ||||| | |     
T  43402078 ttttggtttcacaagacttacccaagttgttcacaaatgattctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaaccctttt 43402176  T
Q  292 c-catgagtccccctttttggttctccaagattcacatc 329  Q
    | || ||| ||||  ||||||||||||||||||||||||    
T  43402177 ctcaagagccccctcttttggttctccaagattcacatc 43402215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 55302253 - 55302390
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| |||||||||  ||| |||||||||||||| ||||   | |||||| | |||||||||||||| | | ||||||||||| ||| || | |    
T  55302253 ttttggtttcacaagactcactcaagttgctcacaaaagaatctccactcatgtgttttccaacctcatgaat-ttttcccaaaaggcaccaaccctttt 55302351  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| |||  |||  ||||||||||||||||||||||||    
T  55302352 cccaagagctccctcttttggttctccaagattcacatc 55302390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 35138815 - 35138896
Alignment:
Q  19 aacttcaacaagttctccaagtaaaaacttaatttcttccattttctcaatctcctaccatgaacaagacactcaaggattt 100  Q
    |||||||||||  || ||||| | |||| |||||||| ||  |||||||||||| | ||||||||||||||||||| |||||    
T  35138815 aacttcaacaaactcaccaagaacaaacataatttctacccatttctcaatctctttccatgaacaagacactcaatgattt 35138896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 1683510 - 1683462
Alignment:
Q  44 aacttaatttcttccattttctcaatctcctaccatgaacaagacactc 92  Q
    |||||||||||| |||||||||||||||  | |||||||||||| ||||    
T  1683510 aacttaatttctaccattttctcaatctatttccatgaacaagagactc 1683462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 204 - 329
Target Start/End: Original strand, 42261910 - 42262034
Alignment:
Q  204 aagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtcccc 303  Q
    |||||||  |||| ||||||| |||| |||||| |||||||||| |||||| | |||||||||||| || ||||||| ||||| ||||| | ||| ||||    
T  42261910 aagactcgcccaagttgctcataaaa-actctcctttgatgtgtttcccaatcccatgaatctctcacctaaaggcaccaaccctctccaaagagccccc 42262008  T
Q  304 ctttttggttctccaagattcacatc 329  Q
     |||||||||||||||||||||||||    
T  42262009 ttttttggttctccaagattcacatc 42262034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 328
Target Start/End: Original strand, 30218322 - 30218457
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| |||||||||  ||| ||||||||||| || |||| |||| ||||| |||||||| |||||||||||||||||||||||  |||  ||||    
T  30218322 ttttggtttcgcaagactcactcaagttgctcacaaa-gattctcctttggtgtgtttcccaaccccatgaatctctccccaaaaggcactaactctctc 30218420  T
Q  292 ccatgagtccccctttttggttctccaagattcacat 328  Q
    |||| || || | ||||||||| ||||||||||||||    
T  30218421 ccataagccctcatttttggttgtccaagattcacat 30218457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 45726809 - 45726673
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| || |||||| |||| ||||||||||| |||||||   | |||||| ||| |||| ||||||||| ||||||||||||| ||||| | ||    
T  45726809 ttttggtttcacatgactcacccaagttgctcacaaatgactctccactcatgtgtttccaaaccccatgaatct-tccccaaaaggcaccaaccctttc 45726711  T
Q  292 ccatgagtccccctttttggttctccaagattcacatc 329  Q
    ||| |||  |||  ||||||||||||||||||||||||    
T  45726710 ccaagagctccctcttttggttctccaagattcacatc 45726673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 42288398 - 42288534
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||  ||| ||||||||||| ||| || | |    
T  42288398 ttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaa--tcttcccaaaaggcaccaaccctttt 42288495  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| ||||  |||||||||| |||||||||||||    
T  42288496 cccaagagccccctcttttggttcttcaagattcacatc 42288534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 1632020 - 1632157
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||| |||||||||| || ||||| | |     
T  1632020 ttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaagacaccaaccctttt 1632118  T
Q  292 c-catgagtccccctttttggttctccaagattcacatc 329  Q
    | || ||| ||||  ||||||||| ||||||||||||||    
T  1632119 cacaagagccccctcttttggttccccaagattcacatc 1632157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 24197704 - 24197643
Alignment:
Q  267 ctccccaaaaggcatcaaccatctcccatgagtccccctttttggttctccaagattcacat 328  Q
    |||||||||||||| ||||| ||||||| ||||||||  ||||||||| |||||||||||||    
T  24197704 ctccccaaaaggcaccaaccctctcccaagagtcccctcttttggttccccaagattcacat 24197643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 30218156 - 30218236
Alignment:
Q  21 cttcaacaagttctccaagtaaaaacttaatttcttccattttctcaatctcctaccatgaacaagacactcaaggatttc 101  Q
    |||||| ||| |||||||| | |||| ||| |||| ||  |||||||||||||| ||||||||||||||||||| ||||||    
T  30218156 cttcaataagctctccaagaacaaacctaacttctacccatttctcaatctccttccatgaacaagacactcaatgatttc 30218236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 35447183 - 35447265
Alignment:
Q  203 caagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaacc 286  Q
    ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||| | ||||||||||| |||||    
T  35447183 caagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-ttcccaaaaggcaccaacc 35447265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 42261597 - 42261673
Alignment:
Q  21 cttcaacaagttctccaagtaaaaacttaatttcttccattttctcaatctcctac---catgaacaagacactcaa 94  Q
    |||||||||| |||||||| | ||||||||||||| | |||||||||||||||| |   ||||||||||| ||||||    
T  42261597 cttcaacaagctctccaagaacaaacttaatttctacgattttctcaatctcctcctttcatgaacaagagactcaa 42261673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 328
Target Start/End: Complemental strand, 24397938 - 24397801
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct- 290  Q
    ||||| |||| ||||||| | |||||||| ||||||| |||||||   | |||||| | ||| ||  |||| |||||||| |||||||| ||||| | |     
T  24397938 ttttggtttcacaagactaacccaaattggtcacaaatgactctccactcatgtgtttaccagcccgatgagtctctccctaaaaggcaccaaccctttt 24397839  T
Q  291 cccatgagtccccctttttggttctccaagattcacat 328  Q
    |||| ||| ||||  |||||||||||||||||||||||    
T  24397838 cccaagagccccctcttttggttctccaagattcacat 24397801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 43731031 - 43730991
Alignment:
Q  189 ctattttgatttcccaagactcatccaaattgctcacaaaa 229  Q
    |||||||| |||||||||| ||| |||||||||||||||||    
T  43731031 ctattttggtttcccaagattcacccaaattgctcacaaaa 43730991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 1694 - 1830
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||||| |||||||||||  |||| ||||||||||  ||||||||| |||||||| || ||||  ||||||||||||| |||||| || ||| | || |    
T  1694 ttttgatctcccaagactcgcccaagttgctcacaat-gactctcatatgatgtgtttctcaactacatgaatctctccacaaaagacaccaagcctcgc 1792  T
Q  292 ccatgagtccccctttttggttctccaagattcacatc 329  Q
    ||| ||||||||  |||||||||| |||||||||||||    
T  1793 ccaagagtcccctcttttggttcttcaagattcacatc 1830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 4512678 - 4512814
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| |||| ||||||||||| |||||||   | |||||| ||| |||| ||||||||| ||||||||||||| ||||| | ||    
T  4512678 ttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttccaaaccccatgaatct-tccccaaaaggcaccaaccctttc 4512776  T
Q  292 ccatgagtccccctttttggttctccaagattcacatc 329  Q
    ||| ||| ||||  ||||||||||| ||||||||||||    
T  4512777 ccaagagccccctcttttggttctctaagattcacatc 4512814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 8359597 - 8359699
Alignment:
Q  183 gatttcctattttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatc 282  Q
    ||||| || ||||| |||| |||||||||||||| |||||||||||||||||||   | |||||| |||||||| ||||||||| ||||||||||||| |    
T  8359597 gattttctcttttggtttcacaagactcatccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcacc 8359695  T
Q  283 aacc 286  Q
    ||||    
T  8359696 aacc 8359699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 6431851 - 6431714
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct- 290  Q
    ||||| |||| ||||||||| |||| ||||||||||||||||||    | |||||| | |||||| ||||||||| ||||||||||||| ||||| | |     
T  6431851 ttttggtttcacaagactcacccaagttgctcacaaaagactctacactcatgtgttttccaaccccatgaatct-tccccaaaaggcaccaaccctttc 6431753  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| ||||  ||||||||||||||||||||||||    
T  6431752 cccaagagccccctcttttggttctccaagattcacatc 6431714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 34311004 - 34311141
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| | ||| || |||||| || ||||||||||||| ||| || | |    
T  34311004 ttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgttttccatccccatgaacct-tccccaaaaggcaccaaccctttt 34311102  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| ||||  ||||||||||||||||||||||||    
T  34311103 cccaagagccccctcttttggttctccaagattcacatc 34311141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 5116515 - 5116378
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| || ||||||||||| | || ||  ||||||| ||| ||||||||| |||| | |||| |  ||||||||||| |||||||||| | ||| ||||    
T  5116515 ttttggttacccaagactcacctaagtttatcacaaatgaccctcatttgaagtgtttaccaatccaatgaatctctctccaaaaggcaccgaccctctc 5116416  T
Q  292 ccatgagtccccctttttggttctccaagattcacatc 329  Q
    ||| ||| ||||  ||||||||||| ||||||||||||    
T  5116415 ccaagagccccctcttttggttctcaaagattcacatc 5116378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 1360264 - 1360344
Alignment:
Q  21 cttcaacaagttctccaagtaaaaacttaatttcttccattttctcaatctcctaccatgaacaagacactcaaggatttc 101  Q
    |||||||||||||||||||  ||||| |||||||| || ||||| ||||||| | |||||||||||| |||||| ||||||    
T  1360264 cttcaacaagttctccaagacaaaacctaatttctacctttttcccaatctcattccatgaacaagagactcaatgatttc 1360344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 329
Target Start/End: Original strand, 22328692 - 22328824
Alignment:
Q  198 tttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaac-catctcccatg 296  Q
    |||||||||| ||| |||| ||||||||||| |||||||   | |||| | ||||||||  |||||||||||||||||||||| |||| | | ||| | |    
T  22328692 tttcccaagattcacccaagttgctcacaaatgactctctactcatgtttttcccaaccctatgaatctctccccaaaaggcaccaactcttttcctaag 22328791  T
Q  297 agtccccctttttggttctccaagattcacatc 329  Q
    || ||||  |||||||||||||||||| |||||    
T  22328792 agccccctcttttggttctccaagatttacatc 22328824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 329
Target Start/End: Complemental strand, 29608619 - 29608484
Alignment:
Q  189 ctattttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-cca 287  Q
    |||||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| |||||||      |||||||||| ||| ||     
T  29608619 ctattttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaat------ccaaaaggcaccaaccct 29608526  T
Q  288 tctcccatgagtccccctttttggttctccaagattcacatc 329  Q
    | || || ||| ||||  ||||||||||||||||||||||||    
T  29608525 tttcacaagagccccctcttttggttctccaagattcacatc 29608484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 4508994 - 4509117
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| | || ||||||||||| |||||||   | |||||| |||||||| ||||||||| ||||||||||||| ||||| | ||    
T  4508994 ttttggtttcacaagactcaccaaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaaccctttc 4509092  T
Q  292 ccatgagtccccctttttggttctc 316  Q
    ||| |||  |||  |||||||||||    
T  4509093 ccaagagctccctcttttggttctc 4509117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 4510836 - 4510959
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| | || ||||||||||| |||||||   | |||||| |||||||| ||||||||| ||||||||||||| ||||| | ||    
T  4510836 ttttggtttcacaagactcaccaaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaaccctttc 4510934  T
Q  292 ccatgagtccccctttttggttctc 316  Q
    ||| |||  |||  |||||||||||    
T  4510935 ccaagagctccctcttttggttctc 4510959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 329
Target Start/End: Complemental strand, 22269856 - 22269718
Alignment:
Q  189 ctattttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccat 288  Q
    |||||||| |||| ||||||||| |||| || ||| ||| ||||||||   | |||||| ||||  || ||||||||| ||||||||||||| ||||  |    
T  22269856 ctattttggtttcacaagactcacccaagtttctctcaatagactctccactcatgtgtttcccctccccatgaatct-tccccaaaaggcaccaactct 22269758  T
Q  289 ctcccatgagtccccctttttggttctccaagattcacatc 329  Q
     ||||| ||| ||| ||||| ||||||||||||||||||||    
T  22269757 ttcccaagagcccctctttt-ggttctccaagattcacatc 22269718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 329
Target Start/End: Original strand, 2361271 - 2361396
Alignment:
Q  204 aagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcc-catgagtccc 302  Q
    |||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||  ||||||||||||| ||||| | | | || ||| |||    
T  2361271 aagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatca-tccccaaaaggcaccaacccttttcacaagagcccc 2361369  T
Q  303 cctttttggttctccaagattcacatc 329  Q
    |  ||||| |||| |||||||||||||    
T  2361370 ctcttttgattcttcaagattcacatc 2361396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 48599622 - 48599715
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaacc 286  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||| | | |||||| ||||||||| ||||||||||||| |||||    
T  48599622 ttttggtttcacaagactcacccaagttgctcacaaaagactctctactcatgttttttccaaccccatgaatct-tccccaaaaggcaccaacc 48599715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 2390162 - 2390069
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaacc 286  Q
    ||||| |||| ||||||||| |||| |||||||||||||||| ||   | |||||| | |||||| ||||||||| |||||||||| || |||||    
T  2390162 ttttggtttcacaagactcacccaagttgctcacaaaagactatccactcatgtgttttccaaccccatgaatct-tccccaaaagccaccaacc 2390069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 3258876 - 3258739
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct- 290  Q
    ||||| |||| ||||||||| |||| ||||| | |||||||||||   | || ||| ||||| || ||||||||| ||||||||||||| ||||| | |     
T  3258876 ttttggtttcacaagactcacccaagttgctaataaaagactctccactcatatgtttcccatccccatgaatct-tccccaaaaggcaccaaccctttt 3258778  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| |||   |||| |||||||||||||||||||    
T  3258777 cccaagagccccatctttttgttctccaagattcacatc 3258739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 329
Target Start/End: Original strand, 43363713 - 43363837
Alignment:
Q  203 caagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtccc 302  Q
    ||||| ||| |||||||||||||||  ||||||||| | |||||| || ||||| | ||||||||| ||||||||| | |||| || ||||| |||  ||    
T  43363713 caagattcacccaaattgctcacaag-gactctcatctcatgtgtttctcaacc-cttgaatctcttcccaaaaggaaccaacaatgtcccaagagctcc 43363810  T
Q  303 cctttttggttctccaagattcacatc 329  Q
    |  |||| |||||||||||| ||||||    
T  43363811 ctcttttagttctccaagatacacatc 43363837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 6360200 - 6360244
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctc 236  Q
    |||||||||| ||||||||| |||| ||||||||||| |||||||    
T  6360200 ttttgatttcacaagactcacccaagttgctcacaaatgactctc 6360244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 7208 - 7071
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| |||| |||||||||||||||||||   | |||||| | |||||| ||||||||| ||||||||||||| ||||| | |     
T  7208 ttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgttttccaaccccatgaatct-tccccaaaaggcaccaaccctttt 7110  T
Q  292 c-catgagtccccctttttggttctccaagattcacatc 329  Q
    | || ||| ||||  ||||||||||||||||||||||||    
T  7109 cacaagagccccctcttttggttctccaagattcacatc 7071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 42435279 - 42435416
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaacc-atct 290  Q
    ||||| |||| |||||||||  ||| |||||||||||||||||||  || || ||| |||||||| ||||||||| |||||||||| || |||||  | |    
T  42435279 ttttggtttcacaagactcactcaagttgctcacaaaagactctccattcatatgtttcccaaccccatgaatct-tccccaaaagtcaccaaccttttt 42435377  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| ||||  ||||||||||||||||||||||||    
T  42435378 cccaagagccccctcttttggttctccaagattcacatc 42435416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 40585595 - 40585506
Alignment:
Q  202 ccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcc 292  Q
    |||| ||||| |||||||||||||||| ||||||| |||||||||| | | |||| |||||||||||| ||||||| |||||||| |||||    
T  40585595 ccaatactcacccaaattgctcacaaa-gactctcctttgatgtgttttcaaaccccatgaatctctcaccaaaagacatcaaccctctcc 40585506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 329
Target Start/End: Complemental strand, 40221614 - 40221488
Alignment:
Q  203 caagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggca-tcaaccatctcccatgagtcc 301  Q
    ||||||||| | || |||||||||||||||||||   | |||||| |||||||| ||||||||| ||||||||||||| | | || | ||||| ||| ||    
T  40221614 caagactcacctaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatct-tccccaaaaggcactaacccctttcccaagagccc 40221516  T
Q  302 ccctttttggttctccaagattcacatc 329  Q
    ||  ||||||||||| ||||||||||||    
T  40221515 cctattttggttctcgaagattcacatc 40221488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 40328659 - 40328522
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct- 290  Q
    ||||| |||| ||||||||| |||| ||||||||||||||||||    | |||||| ||||| || ||||||||| |||| |||||||| ||||| | |     
T  40328659 ttttggtttcacaagactcacccaagttgctcacaaaagactctacactcatgtgtttcccatccccatgaatct-tccctaaaaggcaccaaccctttt 40328561  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||  ||||  ||||||||||||||||||||||||    
T  40328560 cccaagaaccccctcttttggttctccaagattcacatc 40328522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 329
Target Start/End: Original strand, 2999829 - 2999945
Alignment:
Q  213 ccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctcccatgagtccccctttttggt 312  Q
    |||| ||||||||||  |||||||   | |||||| || || || ||||||||| |||||||||| || ||||||| ||||| ||  ||||  |||||||    
T  2999829 ccaagttgctcacaattgactctctactcatgtgtttctcatccccatgaatctttccccaaaagacaccaaccatatcccaagaaccccctcttttggt 2999928  T
Q  313 tctccaagattcacatc 329  Q
    |||||||||||||||||    
T  2999929 tctccaagattcacatc 2999945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 11383866 - 11383729
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatct 290  Q
    ||||| |||| ||||||||| |||| |||||||||||||||| ||   | |||| | |||||||| ||||||||| ||| ||||||||| ||| || | |    
T  11383866 ttttggtttcacaagactcacccaagttgctcacaaaagactttccacttatgtatttcccaaccccatgaatct-tcctcaaaaggcaccaaccctttt 11383768  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    | ||  || ||||  ||||||||||||||||||||||||    
T  11383767 cacaatagccccctcttttggttctccaagattcacatc 11383729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 11137082 - 11137031
Alignment:
Q  21 cttcaacaagttctccaagtaaaaacttaatttcttccattttctcaatctc 72  Q
    |||||||||||||| |||| | | ||||||||||| ||||||||||||||||    
T  11137082 cttcaacaagttcttcaaggacatacttaatttctaccattttctcaatctc 11137031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 9633826 - 9633904
Alignment:
Q  193 tttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccc 271  Q
    |||| ||||| |||| ||| |||| ||||||||||| ||||||||| | |||||| | |||||| ||| ||||||||||    
T  9633826 tttggtttcctaagattcacccaagttgctcacaaatgactctcatcttatgtgtttaccaaccccattaatctctccc 9633904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 28461379 - 28461305
Alignment:
Q  254 acctcatgaatctctccccaaaaggcatcaaccatctcccatgagtccccctttttggttctccaagattcacat 328  Q
    ||||||||||||| ||||||||||| | ||||||| ||| | |||   ||  |||||||||||||||||||||||    
T  28461379 acctcatgaatctatccccaaaaggaaccaaccatttcctaagagcttcctcttttggttctccaagattcacat 28461305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 7444956 - 7445008
Alignment:
Q  48 taatttcttccattttctcaatctcctaccatgaacaagacactcaaggattt 100  Q
    |||||||| ||| |||||||||||| | |||||||||||| |||||| |||||    
T  7444956 taatttctaccaatttctcaatctcttcccatgaacaagagactcaaagattt 7445008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 80577 - 80664
Alignment:
Q  198 tttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaacc 286  Q
    |||||||||||||| |||| |||||||||||||||||||   | |||||| |||||||| ||||||||| ||||||||||||| |||||    
T  80577 tttcccaagactcacccaagttgctcacaaaagactctccgctcatgtgtttcccaaccccatgaatct-tccccaaaaggcaccaacc 80664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 5043507 - 5043371
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatct- 290  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||||   | |||||| |||||||| |||||||||   ||||||||||| ||||| | |     
T  5043507 ttttggtttcacaagactcacccaaattgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctt--cccaaaaggcaccaaccctttt 5043410  T
Q  291 cccatgagtccccctttttggttctccaagattcacatc 329  Q
    |||| ||| || |  ||||||||||||||||||| ||||    
T  5043409 cccaagagccctctcttttggttctccaagattctcatc 5043371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 603368 - 603505
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| |||| ||||||||||| ||| |||   | |||||| |||||||| ||||||||| || |||||||||| ||||| | ||    
T  603368 ttttggtttcacaagactcacccaagttgctcacaaaggacactccactcatgtgtttcccaaccccatgaatct-tctccaaaaggcaccaaccctttc 603466  T
Q  292 c-catgagtccccctttttggttctccaagattcacatc 329  Q
    | || ||| ||||  ||||||||||||||||||||||||    
T  603467 ctcaagagccccctcttttggttctccaagattcacatc 603505  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 21593546 - 21593409
Alignment:
Q  192 ttttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaaccatctc 291  Q
    ||||| |||| ||||||||| |||| ||||||| ||| |||||||   | |||||| | |||||| ||||||||| || |||||||||| ||||| | ||    
T  21593546 ttttggtttcacaagactcacccaagttgctcaaaaatgactctccactcatgtgttttccaaccccatgaatct-tctccaaaaggcaccaaccctttc 21593448  T
Q  292 cc-atgagtccccctttttggttctccaagattcacatc 329  Q
    || | ||| ||||  ||||||||||||||||||||||||    
T  21593447 cccaagagccccctcttttggttctccaagattcacatc 21593409  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 329
Target Start/End: Complemental strand, 17762863 - 17762730
Alignment:
Q  198 tttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatct-ctccccaaaaggcatc-aaccatctcccat 295  Q
    |||| ||||||||| |||| |||||| ||||||||||||   | |||||| |||||||| |||||||||   |||||||||||| | |||| | || ||     
T  17762863 tttcacaagactcacccaagttgctcccaaaagactctccactcatgtgtttcccaaccccatgaatctaacccccaaaaggcaccaaaccttttcacaa 17762764  T
Q  296 gagtccccctttttggttctccaagattcacatc 329  Q
    ||| ||||  ||||||||||||||||||||||||    
T  17762763 gagccccctcttttggttctccaagattcacatc 17762730  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 329
Target Start/End: Original strand, 3809007 - 3809134
Alignment:
Q  203 caagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaaggcatcaa-ccatctcccatgagtcc 301  Q
    ||||||||| |||| ||||||||||| |||||||   | |||||| |||||||| ||||||||| || |||||||| | ||| || | || || ||| ||    
T  3809007 caagactcacccaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatct-tctccaaaaggaaccaacccttttcacaagagccc 3809105  T
Q  302 ccct-ttttggttctccaagattcacatc 329  Q
    |||| ||||||||||||||||||||||||    
T  3809106 ccctcttttggttctccaagattcacatc 3809134  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 329
Target Start/End: Complemental strand, 17757958 - 17757825
Alignment:
Q  198 tttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatct-ctccccaaaaggcatcaa-ccatctcccat 295  Q
    |||| ||||||||| |||| |||||||||||||||||||   | |||||| |||||||| |||||||||   |||||||| ||| ||| || | || ||     
T  17757958 tttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctaacccccaaaatgcaccaacccttttcacaa 17757859  T
Q  296 gagtccccctttttggttctccaagattcacatc 329  Q
    ||| ||||  |||||||||||||| |||||||||    
T  17757858 gagccccctattttggttctccaacattcacatc 17757825  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 25073598 - 25073545
Alignment:
Q  48 taatttcttccattttctcaatctcctaccatgaacaagacactcaaggatttc 101  Q
    |||||||| ||||||| |||||||||| |||||||||||| |||||| ||||||    
T  25073598 taatttctaccattttttcaatctcctcccatgaacaagatactcaatgatttc 25073545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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