View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_23 (Length: 325)
Name: NF11701_low_23
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 44983654 - 44983810
Alignment:
| Q |
21 |
atacaaaccaaatgtaacaaaatggaaaacttaatataaatgcaaattttagttgctgaaagaaaaagagacatacttttttatcttcctcattcagaag |
120 |
Q |
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| T |
44983654 |
atacaaaccaaatgtaacaaaatggaaaacttaatataaatgcaaattttagttgctgaaagaaaaagagacatactttttgatcttcgtcattcagaag |
44983753 |
T |
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| Q |
121 |
ttcactgagggtaggatggctcaaaaactgcaaacaatgacaaagataaagcacaac |
177 |
Q |
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| T |
44983754 |
ttcactgagggtaggatggctcaaaaactgcaaacaatgacaaagataaagcacaac |
44983810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 44983876 - 44983959
Alignment:
| Q |
242 |
taaaatactcacagcattcaaccagaaatcaggaatagatttgataatctcgttccgcttatcgtaacccggcttcctaatctc |
325 |
Q |
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| T |
44983876 |
taaaatactcacagcattcaaccagaaatcaggaatagatttgataatctcgttccgcttatcgtaaaccggcttcctaatctc |
44983959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 47528213 - 47528154
Alignment:
| Q |
243 |
aaaatactcacagcattcaaccagaaatcaggaatagatttgataatctcgttccgctta |
302 |
Q |
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| T |
47528213 |
aaaatactcacagcattcaaccagaagttaggaatagatttgatcatctcatcccgctta |
47528154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 47528446 - 47528302
Alignment:
| Q |
25 |
aaaccaaatgtaacaaaatggaaaacttaatataaat-gcaaattttagttgctgaaagaaaaagagacatacttttttatcttcctcattcagaagttc |
123 |
Q |
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||||||||||||||| | ||||||||||| |||||| | |||||||||| | || |||||| ||| | || |||| |||||||||||||| || || |
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| T |
47528446 |
aaaccaaatgtaacagcagggaaaacttaacataaataggaaattttagtgggtgcgagaaaagaagaaaaaccttttgatcttcctcattcataacttt |
47528347 |
T |
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| Q |
124 |
actgagggtaggatggctcaaaaactgca-aacaatgacaaagat |
167 |
Q |
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| T |
47528346 |
cttgagggtaggatgacgcaaaaactgcacaacaataacaaagat |
47528302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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