View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11701_low_28 (Length: 296)
Name: NF11701_low_28
Description: NF11701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11701_low_28 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 4174692 - 4174971
Alignment:
| Q |
17 |
agttagaagtaagaacctggagatgaactattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatgctgcacgtaacccttttccaa |
116 |
Q |
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| T |
4174692 |
agttagaagtaagaacctggagatgaactattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatcctgcacgtaacccttttccat |
4174791 |
T |
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| Q |
117 |
agatgtaattcacccgtggctcaaaaggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtactttggctcagaaaatcccat |
216 |
Q |
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| T |
4174792 |
agatgtaattcacccgtagctcaaaaggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtaatttggctcagaaaatcccat |
4174891 |
T |
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| Q |
217 |
ccacttagctatcggggatcgaatgccgtcgcaccctattacaatctgttgagacatgaaatcaatttgttaatagtttt |
296 |
Q |
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| T |
4174892 |
ccacttagctatcggggatcgaatgccgtcgcaccctattacaatctgttgagacatgaaatcaatttgttaatagtttt |
4174971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 4170703 - 4170969
Alignment:
| Q |
23 |
aagtaagaacctggagatgaactattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatgctgcacgtaacccttttccaaagatgt |
122 |
Q |
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| T |
4170703 |
aagtaacaacctggagatgaactgttgaagcagataaaccaatagactttggttggagaaacaggaacatatcctgcgcgtaacccttttccatagatgt |
4170802 |
T |
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| Q |
123 |
aattcacccgtggctcaaaaggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtactttggctcagaaaatcccatccactt |
222 |
Q |
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| T |
4170803 |
aattcacccgtggttgaaaaggttgtccgtctgaataggaggcaagtccacggaaagcacaatgaccaacgaactttggctcagaaaatcccatccactt |
4170902 |
T |
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| Q |
223 |
agctatcggggatcgaatgccgtcgcaccctattacaatctgttgagacatgaaatcaatttgttaa |
289 |
Q |
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| T |
4170903 |
agctatcggtgatcgaattccgtcgcaccctattacaatctgtttatacatggaatcaatttgttaa |
4170969 |
T |
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